Results 21 - 35 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18734 | 5' | -55.6 | NC_004682.1 | + | 33970 | 0.76 | 0.180838 |
Target: 5'- cUCUUUGguGAUGCGCUCGuACGguGCCu -3' miRNA: 3'- -AGGAGCauCUACGCGAGC-UGCguCGG- -5' |
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18734 | 5' | -55.6 | NC_004682.1 | + | 35923 | 0.66 | 0.655529 |
Target: 5'- cUUCUCGUcGGGU-CGC-CGcuCGCAGCCg -3' miRNA: 3'- -AGGAGCA-UCUAcGCGaGCu-GCGUCGG- -5' |
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18734 | 5' | -55.6 | NC_004682.1 | + | 37733 | 1.12 | 0.000549 |
Target: 5'- cUCCUCGUAGAUGCGCUCGACGCAGCCu -3' miRNA: 3'- -AGGAGCAUCUACGCGAGCUGCGUCGG- -5' |
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18734 | 5' | -55.6 | NC_004682.1 | + | 37999 | 0.7 | 0.433633 |
Target: 5'- gCCUCGUAGAUcuucgacaGCGcCUCcuCGguGCCg -3' miRNA: 3'- aGGAGCAUCUA--------CGC-GAGcuGCguCGG- -5' |
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18734 | 5' | -55.6 | NC_004682.1 | + | 39301 | 0.68 | 0.567795 |
Target: 5'- gUUUCGUGGucGUGgUCGACGCugAGCCg -3' miRNA: 3'- aGGAGCAUCuaCGCgAGCUGCG--UCGG- -5' |
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18734 | 5' | -55.6 | NC_004682.1 | + | 39832 | 0.66 | 0.709964 |
Target: 5'- gCCUCGgc--UGCGCUCuuGC-CAGCCg -3' miRNA: 3'- aGGAGCaucuACGCGAGc-UGcGUCGG- -5' |
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18734 | 5' | -55.6 | NC_004682.1 | + | 40397 | 0.72 | 0.352274 |
Target: 5'- cUCCUCGUAGGccaagGCGCUC-ACGgugAGCCc -3' miRNA: 3'- -AGGAGCAUCUa----CGCGAGcUGCg--UCGG- -5' |
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18734 | 5' | -55.6 | NC_004682.1 | + | 41002 | 0.66 | 0.688342 |
Target: 5'- aCCUUGUAGGccacGCGCaUCGcuugcucccacGCGCcGCCg -3' miRNA: 3'- aGGAGCAUCUa---CGCG-AGC-----------UGCGuCGG- -5' |
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18734 | 5' | -55.6 | NC_004682.1 | + | 41322 | 0.67 | 0.633529 |
Target: 5'- cUCCUCGcccuUGaCGC-CGAacaGCAGCCg -3' miRNA: 3'- -AGGAGCaucuAC-GCGaGCUg--CGUCGG- -5' |
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18734 | 5' | -55.6 | NC_004682.1 | + | 42151 | 0.7 | 0.453148 |
Target: 5'- gCgUCGUGGAU-CGCUCGGCcccGCgaGGCCg -3' miRNA: 3'- aGgAGCAUCUAcGCGAGCUG---CG--UCGG- -5' |
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18734 | 5' | -55.6 | NC_004682.1 | + | 44957 | 0.67 | 0.643435 |
Target: 5'- gCCgUCGcgAGcaacGCGCUCGACGUacucaacAGCCa -3' miRNA: 3'- aGG-AGCa-UCua--CGCGAGCUGCG-------UCGG- -5' |
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18734 | 5' | -55.6 | NC_004682.1 | + | 45702 | 0.71 | 0.366789 |
Target: 5'- gCCUCGgAGAUGCccGCagcacgcgccaggaUCGGCGCGGCg -3' miRNA: 3'- aGGAGCaUCUACG--CG--------------AGCUGCGUCGg -5' |
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18734 | 5' | -55.6 | NC_004682.1 | + | 47151 | 0.7 | 0.42406 |
Target: 5'- gCUUCGgcGAUG-GCUcCGAUGUGGCCu -3' miRNA: 3'- aGGAGCauCUACgCGA-GCUGCGUCGG- -5' |
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18734 | 5' | -55.6 | NC_004682.1 | + | 48172 | 0.66 | 0.709965 |
Target: 5'- cCUUCGgGGAcaGCGCgUCGuAgGCAGCCu -3' miRNA: 3'- aGGAGCaUCUa-CGCG-AGC-UgCGUCGG- -5' |
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18734 | 5' | -55.6 | NC_004682.1 | + | 48896 | 0.69 | 0.524897 |
Target: 5'- gCUUCGggccuUGCGCUUGuCGCAGUCc -3' miRNA: 3'- aGGAGCaucu-ACGCGAGCuGCGUCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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