Results 1 - 20 of 35 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18734 | 5' | -55.6 | NC_004682.1 | + | 37733 | 1.12 | 0.000549 |
Target: 5'- cUCCUCGUAGAUGCGCUCGACGCAGCCu -3' miRNA: 3'- -AGGAGCAUCUACGCGAGCUGCGUCGG- -5' |
|||||||
18734 | 5' | -55.6 | NC_004682.1 | + | 14883 | 0.68 | 0.535517 |
Target: 5'- gCCUCGaccacgccuGGUGUGUUCGGCGUcucGGCUg -3' miRNA: 3'- aGGAGCau-------CUACGCGAGCUGCG---UCGG- -5' |
|||||||
18734 | 5' | -55.6 | NC_004682.1 | + | 39301 | 0.68 | 0.567795 |
Target: 5'- gUUUCGUGGucGUGgUCGACGCugAGCCg -3' miRNA: 3'- aGGAGCAUCuaCGCgAGCUGCG--UCGG- -5' |
|||||||
18734 | 5' | -55.6 | NC_004682.1 | + | 26637 | 0.67 | 0.600541 |
Target: 5'- aUCCUgGgcGAUGCGgaugaaCGAC-CAGCCg -3' miRNA: 3'- -AGGAgCauCUACGCga----GCUGcGUCGG- -5' |
|||||||
18734 | 5' | -55.6 | NC_004682.1 | + | 28078 | 0.67 | 0.611522 |
Target: 5'- cCCUCGgcGAcgaaGaCGCUCGGgCGUGGCUg -3' miRNA: 3'- aGGAGCauCUa---C-GCGAGCU-GCGUCGG- -5' |
|||||||
18734 | 5' | -55.6 | NC_004682.1 | + | 23607 | 0.67 | 0.622521 |
Target: 5'- aCUUCGccGAUGuCGCuUCGGCgGUGGCCa -3' miRNA: 3'- aGGAGCauCUAC-GCG-AGCUG-CGUCGG- -5' |
|||||||
18734 | 5' | -55.6 | NC_004682.1 | + | 21668 | 0.66 | 0.688341 |
Target: 5'- -aCUCGgcGAUgGCGUcccUCGGUGCAGUCg -3' miRNA: 3'- agGAGCauCUA-CGCG---AGCUGCGUCGG- -5' |
|||||||
18734 | 5' | -55.6 | NC_004682.1 | + | 16792 | 0.66 | 0.698104 |
Target: 5'- uUCCUCGgccugacccguaUGGGUugguuggucacagGCGUcuUCGugGCGGCUg -3' miRNA: 3'- -AGGAGC------------AUCUA-------------CGCG--AGCugCGUCGG- -5' |
|||||||
18734 | 5' | -55.6 | NC_004682.1 | + | 39832 | 0.66 | 0.709964 |
Target: 5'- gCCUCGgc--UGCGCUCuuGC-CAGCCg -3' miRNA: 3'- aGGAGCaucuACGCGAGc-UGcGUCGG- -5' |
|||||||
18734 | 5' | -55.6 | NC_004682.1 | + | 48896 | 0.69 | 0.524897 |
Target: 5'- gCUUCGggccuUGCGCUUGuCGCAGUCc -3' miRNA: 3'- aGGAGCaucu-ACGCGAGCuGCGUCGG- -5' |
|||||||
18734 | 5' | -55.6 | NC_004682.1 | + | 32198 | 0.69 | 0.493547 |
Target: 5'- cUUCUUGcGGuUGuCGCUCuGCGCGGCCa -3' miRNA: 3'- -AGGAGCaUCuAC-GCGAGcUGCGUCGG- -5' |
|||||||
18734 | 5' | -55.6 | NC_004682.1 | + | 29320 | 0.7 | 0.463082 |
Target: 5'- cUCCUgGUGGucgGUGC-CGACGUGGaCCg -3' miRNA: 3'- -AGGAgCAUCua-CGCGaGCUGCGUC-GG- -5' |
|||||||
18734 | 5' | -55.6 | NC_004682.1 | + | 33970 | 0.76 | 0.180838 |
Target: 5'- cUCUUUGguGAUGCGCUCGuACGguGCCu -3' miRNA: 3'- -AGGAGCauCUACGCGAGC-UGCguCGG- -5' |
|||||||
18734 | 5' | -55.6 | NC_004682.1 | + | 9658 | 0.73 | 0.304353 |
Target: 5'- aCUUCGUGGAcGCcCUCGACGC-GCUg -3' miRNA: 3'- aGGAGCAUCUaCGcGAGCUGCGuCGG- -5' |
|||||||
18734 | 5' | -55.6 | NC_004682.1 | + | 33018 | 0.73 | 0.304353 |
Target: 5'- aCgUCGaGGAUGUGCUUGAgGUAGUCg -3' miRNA: 3'- aGgAGCaUCUACGCGAGCUgCGUCGG- -5' |
|||||||
18734 | 5' | -55.6 | NC_004682.1 | + | 40397 | 0.72 | 0.352274 |
Target: 5'- cUCCUCGUAGGccaagGCGCUC-ACGgugAGCCc -3' miRNA: 3'- -AGGAGCAUCUa----CGCGAGcUGCg--UCGG- -5' |
|||||||
18734 | 5' | -55.6 | NC_004682.1 | + | 47151 | 0.7 | 0.42406 |
Target: 5'- gCUUCGgcGAUG-GCUcCGAUGUGGCCu -3' miRNA: 3'- aGGAGCauCUACgCGA-GCUGCGUCGG- -5' |
|||||||
18734 | 5' | -55.6 | NC_004682.1 | + | 17994 | 0.7 | 0.42406 |
Target: 5'- gCCUCGUuGcgGCcuucGCUCaGGCGgCAGCCa -3' miRNA: 3'- aGGAGCAuCuaCG----CGAG-CUGC-GUCGG- -5' |
|||||||
18734 | 5' | -55.6 | NC_004682.1 | + | 37999 | 0.7 | 0.433633 |
Target: 5'- gCCUCGUAGAUcuucgacaGCGcCUCcuCGguGCCg -3' miRNA: 3'- aGGAGCAUCUA--------CGC-GAGcuGCguCGG- -5' |
|||||||
18734 | 5' | -55.6 | NC_004682.1 | + | 42151 | 0.7 | 0.453148 |
Target: 5'- gCgUCGUGGAU-CGCUCGGCcccGCgaGGCCg -3' miRNA: 3'- aGgAGCAUCUAcGCGAGCUG---CG--UCGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home