Results 1 - 20 of 26 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18738 | 3' | -56.6 | NC_004682.1 | + | 34055 | 0.66 | 0.662568 |
Target: 5'- cGCAGuuguugacguacguCAUCGGCguuguacgucUCCG-GGUCGACg- -3' miRNA: 3'- -CGUCu-------------GUAGCCG----------AGGCuCCAGCUGgu -5' |
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18738 | 3' | -56.6 | NC_004682.1 | + | 29324 | 0.66 | 0.658218 |
Target: 5'- -uGGugGUCGGUgCCGAcGUgGACCGc -3' miRNA: 3'- cgUCugUAGCCGaGGCUcCAgCUGGU- -5' |
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18738 | 3' | -56.6 | NC_004682.1 | + | 10955 | 0.66 | 0.658218 |
Target: 5'- cGCAGAa--CGcGCUCCGucGUCGcCCGa -3' miRNA: 3'- -CGUCUguaGC-CGAGGCucCAGCuGGU- -5' |
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18738 | 3' | -56.6 | NC_004682.1 | + | 29104 | 0.66 | 0.658218 |
Target: 5'- gGCGGG-GUCGGCUUCGAGcuUCGcCCGg -3' miRNA: 3'- -CGUCUgUAGCCGAGGCUCc-AGCuGGU- -5' |
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18738 | 3' | -56.6 | NC_004682.1 | + | 24605 | 0.66 | 0.647328 |
Target: 5'- cGCGGA---CGGCaCCGAGGU-GACCu -3' miRNA: 3'- -CGUCUguaGCCGaGGCUCCAgCUGGu -5' |
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18738 | 3' | -56.6 | NC_004682.1 | + | 41403 | 0.66 | 0.646238 |
Target: 5'- gGCAGcuGCGUCGGUgaccgagcgaagcUCCGGGGU-GAUCu -3' miRNA: 3'- -CGUC--UGUAGCCG-------------AGGCUCCAgCUGGu -5' |
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18738 | 3' | -56.6 | NC_004682.1 | + | 12721 | 0.66 | 0.614614 |
Target: 5'- -aGGACAaCGuGCUCCGc-GUCGGCCu -3' miRNA: 3'- cgUCUGUaGC-CGAGGCucCAGCUGGu -5' |
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18738 | 3' | -56.6 | NC_004682.1 | + | 1163 | 0.66 | 0.603728 |
Target: 5'- aGCAGcCuccUCGuCUCCGAGGgUGACCGc -3' miRNA: 3'- -CGUCuGu--AGCcGAGGCUCCaGCUGGU- -5' |
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18738 | 3' | -56.6 | NC_004682.1 | + | 31924 | 0.66 | 0.603728 |
Target: 5'- cGCAGACgcgGUUGGCUcucucCCGAc-UCGACCAg -3' miRNA: 3'- -CGUCUG---UAGCCGA-----GGCUccAGCUGGU- -5' |
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18738 | 3' | -56.6 | NC_004682.1 | + | 40147 | 0.67 | 0.592864 |
Target: 5'- gGCcGGCGUUGGUggccCCGAGGUacacaGGCCc -3' miRNA: 3'- -CGuCUGUAGCCGa---GGCUCCAg----CUGGu -5' |
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18738 | 3' | -56.6 | NC_004682.1 | + | 7660 | 0.67 | 0.592864 |
Target: 5'- gGUAGGCAU-GGC--CGAGGUCG-CCAa -3' miRNA: 3'- -CGUCUGUAgCCGagGCUCCAGCuGGU- -5' |
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18738 | 3' | -56.6 | NC_004682.1 | + | 32870 | 0.67 | 0.592864 |
Target: 5'- cGUGGACGccCaGCUCCGucGGGUCGACg- -3' miRNA: 3'- -CGUCUGUa-GcCGAGGC--UCCAGCUGgu -5' |
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18738 | 3' | -56.6 | NC_004682.1 | + | 22350 | 0.67 | 0.560504 |
Target: 5'- cGCAGGUGUCGGCgcggugacccaUCCGGGGUUccuCCAg -3' miRNA: 3'- -CGUCUGUAGCCG-----------AGGCUCCAGcu-GGU- -5' |
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18738 | 3' | -56.6 | NC_004682.1 | + | 24342 | 0.68 | 0.539199 |
Target: 5'- gGCAGAgcUgGGCUgCGuGGUCGACg- -3' miRNA: 3'- -CGUCUguAgCCGAgGCuCCAGCUGgu -5' |
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18738 | 3' | -56.6 | NC_004682.1 | + | 614 | 0.68 | 0.522356 |
Target: 5'- cGCGGGCuggaucugugagAUCGGUugguccgguUgccucacccaggcgaCCGAGGUCGACCAc -3' miRNA: 3'- -CGUCUG------------UAGCCG---------A---------------GGCUCCAGCUGGU- -5' |
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18738 | 3' | -56.6 | NC_004682.1 | + | 11527 | 0.68 | 0.507788 |
Target: 5'- aGCGGAag-CGGCUC--AGcGUCGACCAc -3' miRNA: 3'- -CGUCUguaGCCGAGgcUC-CAGCUGGU- -5' |
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18738 | 3' | -56.6 | NC_004682.1 | + | 31253 | 0.68 | 0.497488 |
Target: 5'- aGCAGACG--GGCUgCGAGGaUCGGguCCAu -3' miRNA: 3'- -CGUCUGUagCCGAgGCUCC-AGCU--GGU- -5' |
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18738 | 3' | -56.6 | NC_004682.1 | + | 16992 | 0.68 | 0.487283 |
Target: 5'- -aAGACggCGGuCUCCGGGGUCuucgagcagGGCCu -3' miRNA: 3'- cgUCUGuaGCC-GAGGCUCCAG---------CUGGu -5' |
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18738 | 3' | -56.6 | NC_004682.1 | + | 16317 | 0.69 | 0.477178 |
Target: 5'- uGCGGA-GUCuGGCcgaaGAGGUCGACCAc -3' miRNA: 3'- -CGUCUgUAG-CCGagg-CUCCAGCUGGU- -5' |
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18738 | 3' | -56.6 | NC_004682.1 | + | 42448 | 0.69 | 0.467177 |
Target: 5'- cGUGGuACAUggggaugaacUGGCUggCCGGGGUCGGCCu -3' miRNA: 3'- -CGUC-UGUA----------GCCGA--GGCUCCAGCUGGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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