miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18739 5' -57.5 NC_004682.1 + 5110 0.66 0.598613
Target:  5'- gCUUCAGCCacaccuGG-CAGGAgaucuUCGuCGGCGAg -3'
miRNA:   3'- -GAGGUCGG------CCaGUCCU-----AGCuGUCGCU- -5'
18739 5' -57.5 NC_004682.1 + 27261 0.66 0.587787
Target:  5'- cCUCCAGCaCGucCGGGAUCaGCGGCu- -3'
miRNA:   3'- -GAGGUCG-GCcaGUCCUAGcUGUCGcu -5'
18739 5' -57.5 NC_004682.1 + 30590 0.66 0.576997
Target:  5'- gCUCCAcacGCgGGUCGGuAUCGACAaccGCGu -3'
miRNA:   3'- -GAGGU---CGgCCAGUCcUAGCUGU---CGCu -5'
18739 5' -57.5 NC_004682.1 + 29226 0.66 0.552363
Target:  5'- -gCCuGCgGGUCAGGucugcgagacagccGUgGACGGCGGc -3'
miRNA:   3'- gaGGuCGgCCAGUCC--------------UAgCUGUCGCU- -5'
18739 5' -57.5 NC_004682.1 + 18117 0.66 0.549172
Target:  5'- -gCCgaGGCCGGUCuGGGUCGGaagaaggcccgcgaAGCGGc -3'
miRNA:   3'- gaGG--UCGGCCAGuCCUAGCUg-------------UCGCU- -5'
18739 5' -57.5 NC_004682.1 + 26425 0.67 0.53436
Target:  5'- -gCCAGCCGGaUCGGG-UUGcccuCAGCGu -3'
miRNA:   3'- gaGGUCGGCC-AGUCCuAGCu---GUCGCu -5'
18739 5' -57.5 NC_004682.1 + 36170 0.68 0.48275
Target:  5'- -cCCAGCCGGUCGGcGUCcACAGgcCGGu -3'
miRNA:   3'- gaGGUCGGCCAGUCcUAGcUGUC--GCU- -5'
18739 5' -57.5 NC_004682.1 + 3114 0.68 0.472712
Target:  5'- -aCCAucGCCGGUUAcGGGUCGAUcacuggcgcaGGCGGc -3'
miRNA:   3'- gaGGU--CGGCCAGU-CCUAGCUG----------UCGCU- -5'
18739 5' -57.5 NC_004682.1 + 42726 0.68 0.46278
Target:  5'- cCUCCAGCguCGGgaaCGGGGUucgCGACGGCu- -3'
miRNA:   3'- -GAGGUCG--GCCa--GUCCUA---GCUGUCGcu -5'
18739 5' -57.5 NC_004682.1 + 42466 0.68 0.452959
Target:  5'- -aCUGGCUGGcCGGGGUCGGCcucccuGCGGc -3'
miRNA:   3'- gaGGUCGGCCaGUCCUAGCUGu-----CGCU- -5'
18739 5' -57.5 NC_004682.1 + 33612 0.68 0.433665
Target:  5'- -gCUGGCCagGGUCAGGAaCGACuGCGu -3'
miRNA:   3'- gaGGUCGG--CCAGUCCUaGCUGuCGCu -5'
18739 5' -57.5 NC_004682.1 + 4501 0.69 0.424199
Target:  5'- -cCCGGCgGGcUCGGGGccgcacgcgcuUCGACAGCa- -3'
miRNA:   3'- gaGGUCGgCC-AGUCCU-----------AGCUGUCGcu -5'
18739 5' -57.5 NC_004682.1 + 35481 0.69 0.414857
Target:  5'- gUCCGGgUGGUCcGGGUCG-CAGaCGAu -3'
miRNA:   3'- gAGGUCgGCCAGuCCUAGCuGUC-GCU- -5'
18739 5' -57.5 NC_004682.1 + 29086 0.69 0.405643
Target:  5'- gUCCuGCCGGgagaugucggCGGGGUCGGCuuCGAg -3'
miRNA:   3'- gAGGuCGGCCa---------GUCCUAGCUGucGCU- -5'
18739 5' -57.5 NC_004682.1 + 13884 0.69 0.387606
Target:  5'- aUCCaccgaGGCCGGuUCAcGGUCGACGGaCGAg -3'
miRNA:   3'- gAGG-----UCGGCC-AGUcCUAGCUGUC-GCU- -5'
18739 5' -57.5 NC_004682.1 + 30762 0.7 0.361559
Target:  5'- gUCUgAGCCGGgaugcCGGuGAUCGACAuGCGAg -3'
miRNA:   3'- gAGG-UCGGCCa----GUC-CUAGCUGU-CGCU- -5'
18739 5' -57.5 NC_004682.1 + 34557 0.7 0.353151
Target:  5'- gCUgCAcGCCGGUCGGuGuucacAUCGACGGUGAc -3'
miRNA:   3'- -GAgGU-CGGCCAGUC-C-----UAGCUGUCGCU- -5'
18739 5' -57.5 NC_004682.1 + 43277 0.71 0.313214
Target:  5'- gUCCGGCUcugGGUCcGGGucaaagcgcUCGGCGGCGAu -3'
miRNA:   3'- gAGGUCGG---CCAGuCCU---------AGCUGUCGCU- -5'
18739 5' -57.5 NC_004682.1 + 4971 0.71 0.298225
Target:  5'- -cUCGGgCGGUCuGGAUCGccACAGCGGc -3'
miRNA:   3'- gaGGUCgGCCAGuCCUAGC--UGUCGCU- -5'
18739 5' -57.5 NC_004682.1 + 48069 0.72 0.279579
Target:  5'- uUCCAGUCGGcgaugucucgaugggUCAGGccggUGACGGCGAg -3'
miRNA:   3'- gAGGUCGGCC---------------AGUCCua--GCUGUCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.