miRNA display CGI


Results 1 - 20 of 35 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18742 5' -54.4 NC_004682.1 + 44658 1.08 0.001348
Target:  5'- cUCCAACACCAAACCCUCGUCGCGGAGc -3'
miRNA:   3'- -AGGUUGUGGUUUGGGAGCAGCGCCUC- -5'
18742 5' -54.4 NC_004682.1 + 30183 0.81 0.116203
Target:  5'- aCCGACGCCAGGaUCUCGUCGUGGAu -3'
miRNA:   3'- aGGUUGUGGUUUgGGAGCAGCGCCUc -5'
18742 5' -54.4 NC_004682.1 + 16600 0.77 0.191372
Target:  5'- cCCGACGCaggacACCCUCGUCGCcGAGg -3'
miRNA:   3'- aGGUUGUGguu--UGGGAGCAGCGcCUC- -5'
18742 5' -54.4 NC_004682.1 + 2770 0.77 0.213066
Target:  5'- gUCGGCAcCCAGAUCC-CGUCGCGGAu -3'
miRNA:   3'- aGGUUGU-GGUUUGGGaGCAGCGCCUc -5'
18742 5' -54.4 NC_004682.1 + 31049 0.76 0.249537
Target:  5'- gUCCGGgACCGu-CCagaUCGUCGCGGGGg -3'
miRNA:   3'- -AGGUUgUGGUuuGGg--AGCAGCGCCUC- -5'
18742 5' -54.4 NC_004682.1 + 19028 0.72 0.379699
Target:  5'- gCgGGCACCAcgguaguGAUCCgCGUCGUGGAGa -3'
miRNA:   3'- aGgUUGUGGU-------UUGGGaGCAGCGCCUC- -5'
18742 5' -54.4 NC_004682.1 + 26907 0.72 0.39874
Target:  5'- cUCCAGCGacCCGGAgcggUCCUUGUCGCGGuAGu -3'
miRNA:   3'- -AGGUUGU--GGUUU----GGGAGCAGCGCC-UC- -5'
18742 5' -54.4 NC_004682.1 + 43931 0.72 0.426978
Target:  5'- gCCAGgGCCAuugcgauGCCCUCGgugaGCGGAc -3'
miRNA:   3'- aGGUUgUGGUu------UGGGAGCag--CGCCUc -5'
18742 5' -54.4 NC_004682.1 + 26257 0.7 0.486811
Target:  5'- -aCGACACCAGcACCg-CGuUCGCGGGGa -3'
miRNA:   3'- agGUUGUGGUU-UGGgaGC-AGCGCCUC- -5'
18742 5' -54.4 NC_004682.1 + 6441 0.7 0.518183
Target:  5'- gUCCGcguaGCggaACCGGGCCUUCucuUCGCGGAGa -3'
miRNA:   3'- -AGGU----UG---UGGUUUGGGAGc--AGCGCCUC- -5'
18742 5' -54.4 NC_004682.1 + 36321 0.69 0.561182
Target:  5'- aCUGGCgaguGCCAgGGCCgUCGUCGCGGGu -3'
miRNA:   3'- aGGUUG----UGGU-UUGGgAGCAGCGCCUc -5'
18742 5' -54.4 NC_004682.1 + 13611 0.69 0.56554
Target:  5'- aUCCGGCugaACCAGaacgcgggcagcacgGCCCUCGgCGCGGcGa -3'
miRNA:   3'- -AGGUUG---UGGUU---------------UGGGAGCaGCGCCuC- -5'
18742 5' -54.4 NC_004682.1 + 7340 0.68 0.605097
Target:  5'- cCCGuucGCAgCCGcGCUCUCGcUCGCGGAa -3'
miRNA:   3'- aGGU---UGU-GGUuUGGGAGC-AGCGCCUc -5'
18742 5' -54.4 NC_004682.1 + 24496 0.68 0.605097
Target:  5'- aCCGACACCGcuggcaucAGCCaggUCGgCGCGGAc -3'
miRNA:   3'- aGGUUGUGGU--------UUGGg--AGCaGCGCCUc -5'
18742 5' -54.4 NC_004682.1 + 10273 0.68 0.616157
Target:  5'- gCCAAUcCCGcGCUCUcCGUUGCGGAa -3'
miRNA:   3'- aGGUUGuGGUuUGGGA-GCAGCGCCUc -5'
18742 5' -54.4 NC_004682.1 + 35396 0.68 0.616157
Target:  5'- gUCCucuucgcGCugCuuGCCCUCGUCGUccuucgcgauGGAGu -3'
miRNA:   3'- -AGGu------UGugGuuUGGGAGCAGCG----------CCUC- -5'
18742 5' -54.4 NC_004682.1 + 44903 0.68 0.63831
Target:  5'- gCCAGCGCC--GCCCUUGcCGUcGAGc -3'
miRNA:   3'- aGGUUGUGGuuUGGGAGCaGCGcCUC- -5'
18742 5' -54.4 NC_004682.1 + 14423 0.68 0.648276
Target:  5'- gCCGAgACCAAguccgaggaggacGCgCUUCGUCGUGGGa -3'
miRNA:   3'- aGGUUgUGGUU-------------UG-GGAGCAGCGCCUc -5'
18742 5' -54.4 NC_004682.1 + 30693 0.68 0.649383
Target:  5'- aCUGAgGCCAucaauuGGCCCUCGUCGgccaGGAa -3'
miRNA:   3'- aGGUUgUGGU------UUGGGAGCAGCg---CCUc -5'
18742 5' -54.4 NC_004682.1 + 42304 0.68 0.66044
Target:  5'- cUUCAGCACCGggUUgcCGUCGUGGAa -3'
miRNA:   3'- -AGGUUGUGGUuuGGgaGCAGCGCCUc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.