miRNA display CGI


Results 1 - 20 of 35 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18742 5' -54.4 NC_004682.1 + 44658 1.08 0.001348
Target:  5'- cUCCAACACCAAACCCUCGUCGCGGAGc -3'
miRNA:   3'- -AGGUUGUGGUUUGGGAGCAGCGCCUC- -5'
18742 5' -54.4 NC_004682.1 + 22066 0.66 0.767689
Target:  5'- uUCCGAUcCCGGACaCCgUGuUCGUGGAGc -3'
miRNA:   3'- -AGGUUGuGGUUUG-GGaGC-AGCGCCUC- -5'
18742 5' -54.4 NC_004682.1 + 31743 0.66 0.757408
Target:  5'- gUCCGAggaaGCCcagauGAGCCCggacgaaGUCGCGGAa -3'
miRNA:   3'- -AGGUUg---UGG-----UUUGGGag-----CAGCGCCUc -5'
18742 5' -54.4 NC_004682.1 + 23654 0.66 0.757408
Target:  5'- aCCGACggGCCugcGGCCCUCc-UGCGGGGc -3'
miRNA:   3'- aGGUUG--UGGu--UUGGGAGcaGCGCCUC- -5'
18742 5' -54.4 NC_004682.1 + 42419 0.66 0.757408
Target:  5'- gCCAACgagggaucacagGCCGAACuCCUCGUgGUacauGGGGa -3'
miRNA:   3'- aGGUUG------------UGGUUUG-GGAGCAgCG----CCUC- -5'
18742 5' -54.4 NC_004682.1 + 18520 0.66 0.725834
Target:  5'- -gCAGaGCCAGAUggCCUCGcUCGCGGAc -3'
miRNA:   3'- agGUUgUGGUUUG--GGAGC-AGCGCCUc -5'
18742 5' -54.4 NC_004682.1 + 43322 0.67 0.715104
Target:  5'- uUCCAGuuCGCgGaacuucuccgcGACCCUC-UCGCGGGGc -3'
miRNA:   3'- -AGGUU--GUGgU-----------UUGGGAGcAGCGCCUC- -5'
18742 5' -54.4 NC_004682.1 + 31579 0.67 0.682463
Target:  5'- --gAGCACgAAcCCCUugaCGUUGCGGAGa -3'
miRNA:   3'- aggUUGUGgUUuGGGA---GCAGCGCCUC- -5'
18742 5' -54.4 NC_004682.1 + 30693 0.68 0.649383
Target:  5'- aCUGAgGCCAucaauuGGCCCUCGUCGgccaGGAa -3'
miRNA:   3'- aGGUUgUGGU------UUGGGAGCAGCg---CCUc -5'
18742 5' -54.4 NC_004682.1 + 10273 0.68 0.616157
Target:  5'- gCCAAUcCCGcGCUCUcCGUUGCGGAa -3'
miRNA:   3'- aGGUUGuGGUuUGGGA-GCAGCGCCUc -5'
18742 5' -54.4 NC_004682.1 + 30183 0.81 0.116203
Target:  5'- aCCGACGCCAGGaUCUCGUCGUGGAu -3'
miRNA:   3'- aGGUUGUGGUUUgGGAGCAGCGCCUc -5'
18742 5' -54.4 NC_004682.1 + 2770 0.77 0.213066
Target:  5'- gUCGGCAcCCAGAUCC-CGUCGCGGAu -3'
miRNA:   3'- aGGUUGU-GGUUUGGGaGCAGCGCCUc -5'
18742 5' -54.4 NC_004682.1 + 26907 0.72 0.39874
Target:  5'- cUCCAGCGacCCGGAgcggUCCUUGUCGCGGuAGu -3'
miRNA:   3'- -AGGUUGU--GGUUU----GGGAGCAGCGCC-UC- -5'
18742 5' -54.4 NC_004682.1 + 36321 0.69 0.561182
Target:  5'- aCUGGCgaguGCCAgGGCCgUCGUCGCGGGu -3'
miRNA:   3'- aGGUUG----UGGU-UUGGgAGCAGCGCCUc -5'
18742 5' -54.4 NC_004682.1 + 24496 0.68 0.605097
Target:  5'- aCCGACACCGcuggcaucAGCCaggUCGgCGCGGAc -3'
miRNA:   3'- aGGUUGUGGU--------UUGGg--AGCaGCGCCUc -5'
18742 5' -54.4 NC_004682.1 + 7340 0.68 0.605097
Target:  5'- cCCGuucGCAgCCGcGCUCUCGcUCGCGGAa -3'
miRNA:   3'- aGGU---UGU-GGUuUGGGAGC-AGCGCCUc -5'
18742 5' -54.4 NC_004682.1 + 16600 0.77 0.191372
Target:  5'- cCCGACGCaggacACCCUCGUCGCcGAGg -3'
miRNA:   3'- aGGUUGUGguu--UGGGAGCAGCGcCUC- -5'
18742 5' -54.4 NC_004682.1 + 21310 0.66 0.736469
Target:  5'- aCCAu--CCAAACCCgCGUacCGCaGGAGg -3'
miRNA:   3'- aGGUuguGGUUUGGGaGCA--GCG-CCUC- -5'
18742 5' -54.4 NC_004682.1 + 35271 0.67 0.715104
Target:  5'- gUCAACGCgAGG---UCGUCGCGGAGu -3'
miRNA:   3'- aGGUUGUGgUUUgggAGCAGCGCCUC- -5'
18742 5' -54.4 NC_004682.1 + 28976 0.67 0.715104
Target:  5'- cUCGAC-CC-AACCCUCGUaguaGUGGAa -3'
miRNA:   3'- aGGUUGuGGuUUGGGAGCAg---CGCCUc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.