miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18744 3' -58.4 NC_004682.1 + 46969 0.66 0.551904
Target:  5'- cCUCcGCguGGCGCAGCAgcuuggcgaccugcuUCUGCa-- -3'
miRNA:   3'- aGAGcUGguCCGCGUCGU---------------AGACGccc -5'
18744 3' -58.4 NC_004682.1 + 23651 0.66 0.547672
Target:  5'- --cUGACCgacGGGCcuGCGGCccucCUGCGGGg -3'
miRNA:   3'- agaGCUGG---UCCG--CGUCGua--GACGCCC- -5'
18744 3' -58.4 NC_004682.1 + 33386 0.66 0.532945
Target:  5'- aUCUCG-CCguGGGCGCAGUAgcgcuucuccccgUUGgGGGc -3'
miRNA:   3'- -AGAGCuGG--UCCGCGUCGUa------------GACgCCC- -5'
18744 3' -58.4 NC_004682.1 + 36224 0.66 0.526677
Target:  5'- uUCUCGACCGcguuGuCGCGGUAcUgaGCGGGc -3'
miRNA:   3'- -AGAGCUGGUc---C-GCGUCGU-AgaCGCCC- -5'
18744 3' -58.4 NC_004682.1 + 24897 0.66 0.520436
Target:  5'- -aUCGACCgcaggacccggcuggAGGCGCAaccgcgccguGCGUCUGgcUGGGu -3'
miRNA:   3'- agAGCUGG---------------UCCGCGU----------CGUAGAC--GCCC- -5'
18744 3' -58.4 NC_004682.1 + 2666 0.66 0.516292
Target:  5'- gCUCGcCCGguguGGCgGCAGCGaccUCUGCcuGGGg -3'
miRNA:   3'- aGAGCuGGU----CCG-CGUCGU---AGACG--CCC- -5'
18744 3' -58.4 NC_004682.1 + 14332 0.66 0.516292
Target:  5'- cCUCGACCuccGUGCGGCucuggaggcgCUGCGaGGc -3'
miRNA:   3'- aGAGCUGGuc-CGCGUCGua--------GACGC-CC- -5'
18744 3' -58.4 NC_004682.1 + 16120 0.66 0.513193
Target:  5'- gCUCuACCGGGCGCAccggcuggugacucGguUCcugaUGCGGGc -3'
miRNA:   3'- aGAGcUGGUCCGCGU--------------CguAG----ACGCCC- -5'
18744 3' -58.4 NC_004682.1 + 49287 0.66 0.495779
Target:  5'- cUUCGACCAGGaccCGCAGCAcgUCgccGCGu- -3'
miRNA:   3'- aGAGCUGGUCC---GCGUCGU--AGa--CGCcc -5'
18744 3' -58.4 NC_004682.1 + 47290 0.67 0.48566
Target:  5'- cCUCGGCCAGcGC-CAGgA-CUaGCGGGu -3'
miRNA:   3'- aGAGCUGGUC-CGcGUCgUaGA-CGCCC- -5'
18744 3' -58.4 NC_004682.1 + 16237 0.67 0.474645
Target:  5'- cCUCGGCguGGCGUcguuccuGGCG-CUGUGcGGa -3'
miRNA:   3'- aGAGCUGguCCGCG-------UCGUaGACGC-CC- -5'
18744 3' -58.4 NC_004682.1 + 40214 0.67 0.465727
Target:  5'- cUCUCGACCAGuggccacucGCGCccacccGCGaaugaUGCGGGg -3'
miRNA:   3'- -AGAGCUGGUC---------CGCGu-----CGUag---ACGCCC- -5'
18744 3' -58.4 NC_004682.1 + 48211 0.67 0.446226
Target:  5'- gUCUCGACCAGGaCGCcGGCcUCguauCGGc -3'
miRNA:   3'- -AGAGCUGGUCC-GCG-UCGuAGac--GCCc -5'
18744 3' -58.4 NC_004682.1 + 42537 0.67 0.446226
Target:  5'- --cCGACguGGCucgGCGGCGccUCUGCGGc -3'
miRNA:   3'- agaGCUGguCCG---CGUCGU--AGACGCCc -5'
18744 3' -58.4 NC_004682.1 + 43410 0.67 0.436648
Target:  5'- uUCcCGGCCAuGuaGUAGUccccgAUCUGCGGGg -3'
miRNA:   3'- -AGaGCUGGU-CcgCGUCG-----UAGACGCCC- -5'
18744 3' -58.4 NC_004682.1 + 24026 0.68 0.427189
Target:  5'- gUCcCGcGCCAGGgacuCGCAccGCGUgCUGCGGGg -3'
miRNA:   3'- -AGaGC-UGGUCC----GCGU--CGUA-GACGCCC- -5'
18744 3' -58.4 NC_004682.1 + 30837 0.68 0.415077
Target:  5'- gCUCGGgagcgccuCCAGGCGCgacuucaccgucgcGGCAgucgcgUUGCGGGc -3'
miRNA:   3'- aGAGCU--------GGUCCGCG--------------UCGUa-----GACGCCC- -5'
18744 3' -58.4 NC_004682.1 + 28160 0.68 0.390606
Target:  5'- uUCUUGugC-GGUGUcGCG-CUGCGGGa -3'
miRNA:   3'- -AGAGCugGuCCGCGuCGUaGACGCCC- -5'
18744 3' -58.4 NC_004682.1 + 45743 0.7 0.323852
Target:  5'- -gUCGACCacggGGGuCGguGCGggUGCGGGa -3'
miRNA:   3'- agAGCUGG----UCC-GCguCGUagACGCCC- -5'
18744 3' -58.4 NC_004682.1 + 33115 0.7 0.308549
Target:  5'- uUCUCGACCAGGC-CGGggauCAUCgGCuGGa -3'
miRNA:   3'- -AGAGCUGGUCCGcGUC----GUAGaCGcCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.