miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18746 3' -59.5 NC_004682.1 + 9923 0.66 0.46333
Target:  5'- uUCCGUGAggcgggugcugaUCACCggcagccgcgacugGGUCGCCCGGAc -3'
miRNA:   3'- uGGGUACUg-----------AGUGGa-------------UCGGCGGGCCU- -5'
18746 3' -59.5 NC_004682.1 + 364 0.66 0.46137
Target:  5'- cCCCAagcGGCUCcCCUccgGGagCGCCCGGAg -3'
miRNA:   3'- uGGGUa--CUGAGuGGA---UCg-GCGGGCCU- -5'
18746 3' -59.5 NC_004682.1 + 30363 0.66 0.46137
Target:  5'- uGCCCGuucUGGCUCGCCU---CGCgCUGGAg -3'
miRNA:   3'- -UGGGU---ACUGAGUGGAucgGCG-GGCCU- -5'
18746 3' -59.5 NC_004682.1 + 33414 0.66 0.442009
Target:  5'- cCCCGUugggGGC-CuCCUgAGCCGCCUGGGg -3'
miRNA:   3'- uGGGUA----CUGaGuGGA-UCGGCGGGCCU- -5'
18746 3' -59.5 NC_004682.1 + 48284 0.66 0.442009
Target:  5'- uGCUCAUGGCUCugcaguCCcAGCCGCUCu-- -3'
miRNA:   3'- -UGGGUACUGAGu-----GGaUCGGCGGGccu -5'
18746 3' -59.5 NC_004682.1 + 26224 0.67 0.423117
Target:  5'- aGCCCGUGGCguUCGCCgGGUCGgagUCGGAg -3'
miRNA:   3'- -UGGGUACUG--AGUGGaUCGGCg--GGCCU- -5'
18746 3' -59.5 NC_004682.1 + 37178 0.67 0.420325
Target:  5'- gGCCCAUGAC-CACCgagGucaugaacuucuucGCCGCgCCGaGGg -3'
miRNA:   3'- -UGGGUACUGaGUGGa--U--------------CGGCG-GGC-CU- -5'
18746 3' -59.5 NC_004682.1 + 4360 0.67 0.413854
Target:  5'- cGCUgGUGACcgccgUCACCgaagccGCCGCCaCGGGc -3'
miRNA:   3'- -UGGgUACUG-----AGUGGau----CGGCGG-GCCU- -5'
18746 3' -59.5 NC_004682.1 + 36666 0.67 0.399297
Target:  5'- gAUCCAggaGCcCACCUucacgucaggcagcGCCGCCCGGAg -3'
miRNA:   3'- -UGGGUac-UGaGUGGAu-------------CGGCGGGCCU- -5'
18746 3' -59.5 NC_004682.1 + 22974 0.67 0.386831
Target:  5'- aGCCCuccgGGCUgGCCUucgGGCUGgUCCGGGg -3'
miRNA:   3'- -UGGGua--CUGAgUGGA---UCGGC-GGGCCU- -5'
18746 3' -59.5 NC_004682.1 + 45909 0.67 0.38683
Target:  5'- cGCaCUcgGGCUCGCC--GUCGUCCGGGu -3'
miRNA:   3'- -UG-GGuaCUGAGUGGauCGGCGGGCCU- -5'
18746 3' -59.5 NC_004682.1 + 27856 0.68 0.352655
Target:  5'- cCCCcgGACcaGCCcgaaGGCCaGCCCGGAg -3'
miRNA:   3'- uGGGuaCUGagUGGa---UCGG-CGGGCCU- -5'
18746 3' -59.5 NC_004682.1 + 34155 0.68 0.336387
Target:  5'- aGCCCuccaGGCccaUCACCgcuGCCGCCCGa- -3'
miRNA:   3'- -UGGGua--CUG---AGUGGau-CGGCGGGCcu -5'
18746 3' -59.5 NC_004682.1 + 32487 0.68 0.336387
Target:  5'- gACCCGaGuaGCUCACCcAGCCucgGCCCGaGAa -3'
miRNA:   3'- -UGGGUaC--UGAGUGGaUCGG---CGGGC-CU- -5'
18746 3' -59.5 NC_004682.1 + 23450 0.69 0.313025
Target:  5'- gGCCag-GACuUCACCgaggacGCCGUCCGGGa -3'
miRNA:   3'- -UGGguaCUG-AGUGGau----CGGCGGGCCU- -5'
18746 3' -59.5 NC_004682.1 + 20181 0.69 0.313025
Target:  5'- gGCCCAggaACUCcgcguCCUGGCCGCgcugucgggcgaCCGGAc -3'
miRNA:   3'- -UGGGUac-UGAGu----GGAUCGGCG------------GGCCU- -5'
18746 3' -59.5 NC_004682.1 + 9425 0.7 0.270043
Target:  5'- cACCCcgGAgCuucgcucggUCACCgacgcAGCUGCCCGGAc -3'
miRNA:   3'- -UGGGuaCU-G---------AGUGGa----UCGGCGGGCCU- -5'
18746 3' -59.5 NC_004682.1 + 32404 0.7 0.250397
Target:  5'- gGCCugCAUGAuCUC-CUUGGCCGUCUGGAc -3'
miRNA:   3'- -UGG--GUACU-GAGuGGAUCGGCGGGCCU- -5'
18746 3' -59.5 NC_004682.1 + 47061 1.08 0.000399
Target:  5'- gACCCAUGACUCACCUAGCCGCCCGGAu -3'
miRNA:   3'- -UGGGUACUGAGUGGAUCGGCGGGCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.