miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18748 3' -54.6 NC_004682.1 + 50046 0.66 0.732767
Target:  5'- aGGGUGGCGUUCGGuCGgUCGcuuccuccUGGCUCGu -3'
miRNA:   3'- gUUCAUCGCGAGCU-GC-GGC--------AUCGAGU- -5'
18748 3' -54.6 NC_004682.1 + 10589 0.66 0.732767
Target:  5'- ----gAGCGCUCGACGCacugGGCa-- -3'
miRNA:   3'- guucaUCGCGAGCUGCGgca-UCGagu -5'
18748 3' -54.6 NC_004682.1 + 37537 0.66 0.72199
Target:  5'- -cAGUGGUGCUCGcucuCGCCGgu-CUCu -3'
miRNA:   3'- guUCAUCGCGAGCu---GCGGCaucGAGu -5'
18748 3' -54.6 NC_004682.1 + 15335 0.66 0.72199
Target:  5'- uGGGaGGCGa-CGACGCCGUcguGCUCc -3'
miRNA:   3'- gUUCaUCGCgaGCUGCGGCAu--CGAGu -5'
18748 3' -54.6 NC_004682.1 + 49943 0.66 0.71112
Target:  5'- -cAGUGGgGCgugCGAUGCCuGUGGC-CGu -3'
miRNA:   3'- guUCAUCgCGa--GCUGCGG-CAUCGaGU- -5'
18748 3' -54.6 NC_004682.1 + 30385 0.66 0.71112
Target:  5'- ----cAGCGUcgUGAuggUGCCGUGGCUCAu -3'
miRNA:   3'- guucaUCGCGa-GCU---GCGGCAUCGAGU- -5'
18748 3' -54.6 NC_004682.1 + 43291 0.67 0.666957
Target:  5'- cCGGGUcaaAGCGCUCGGCGgCGauGUUCu -3'
miRNA:   3'- -GUUCA---UCGCGAGCUGCgGCauCGAGu -5'
18748 3' -54.6 NC_004682.1 + 37738 0.67 0.655803
Target:  5'- --cGUAgauGCGCUCGACGCagccugCGUAGCcCGc -3'
miRNA:   3'- guuCAU---CGCGAGCUGCG------GCAUCGaGU- -5'
18748 3' -54.6 NC_004682.1 + 1119 0.67 0.644627
Target:  5'- gGGGcUGGCGCUUGACGUgagGGUUCAa -3'
miRNA:   3'- gUUC-AUCGCGAGCUGCGgcaUCGAGU- -5'
18748 3' -54.6 NC_004682.1 + 1525 0.68 0.611068
Target:  5'- cCGAGUGGgaGUUCGACaucgucgggGCCGUGGC-CAc -3'
miRNA:   3'- -GUUCAUCg-CGAGCUG---------CGGCAUCGaGU- -5'
18748 3' -54.6 NC_004682.1 + 45901 0.68 0.577678
Target:  5'- gCGAGUAGCGCacUCGGgcuCGCCGUcguccggguccuGGUUCu -3'
miRNA:   3'- -GUUCAUCGCG--AGCU---GCGGCA------------UCGAGu -5'
18748 3' -54.6 NC_004682.1 + 39343 0.68 0.566629
Target:  5'- ---uUGGCGCggCGGCaGCCGUAGCa-- -3'
miRNA:   3'- guucAUCGCGa-GCUG-CGGCAUCGagu -5'
18748 3' -54.6 NC_004682.1 + 38739 0.69 0.501756
Target:  5'- cCAGGUAgGCGUUgcccugcggaccCGACGCCGUGG-UCAg -3'
miRNA:   3'- -GUUCAU-CGCGA------------GCUGCGGCAUCgAGU- -5'
18748 3' -54.6 NC_004682.1 + 42522 0.7 0.480841
Target:  5'- ----aGGUGCUCGAUGUacccgaCGUGGCUCGg -3'
miRNA:   3'- guucaUCGCGAGCUGCG------GCAUCGAGU- -5'
18748 3' -54.6 NC_004682.1 + 8853 0.7 0.480841
Target:  5'- uGAGUccgAGCGCcggccCGACGCCGUAGgCgUCAc -3'
miRNA:   3'- gUUCA---UCGCGa----GCUGCGGCAUC-G-AGU- -5'
18748 3' -54.6 NC_004682.1 + 35972 0.72 0.383445
Target:  5'- -uGGUcgaGGCGUUCG-CGCCGUaguacAGCUCAa -3'
miRNA:   3'- guUCA---UCGCGAGCuGCGGCA-----UCGAGU- -5'
18748 3' -54.6 NC_004682.1 + 43440 0.73 0.323522
Target:  5'- ----gGGgGCUCGAUGCCGUAGgUCu -3'
miRNA:   3'- guucaUCgCGAGCUGCGGCAUCgAGu -5'
18748 3' -54.6 NC_004682.1 + 49542 1.08 0.001102
Target:  5'- cCAAGUAGCGCUCGACGCCGUAGCUCAu -3'
miRNA:   3'- -GUUCAUCGCGAGCUGCGGCAUCGAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.