Results 41 - 60 of 74 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
18748 | 5' | -57.4 | NC_004682.1 | + | 38755 | 0.67 | 0.504118 |
Target: 5'- cUGCGGACCcgacGCCGuggUCAGguugGUgUCGGCCn -3' miRNA: 3'- -ACGCUUGG----UGGC---AGUCg---CAgAGCCGG- -5' |
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18748 | 5' | -57.4 | NC_004682.1 | + | 47126 | 0.68 | 0.483808 |
Target: 5'- cGCGAccguauUCGCCGUCAGCGacgaCUCccGCCg -3' miRNA: 3'- aCGCUu-----GGUGGCAGUCGCa---GAGc-CGG- -5' |
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18748 | 5' | -57.4 | NC_004682.1 | + | 6505 | 0.68 | 0.483808 |
Target: 5'- gGCGGGCUACuCGcaaggcgCGGUgGUCgUCGGCCa -3' miRNA: 3'- aCGCUUGGUG-GCa------GUCG-CAG-AGCCGG- -5' |
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18748 | 5' | -57.4 | NC_004682.1 | + | 45468 | 0.68 | 0.483808 |
Target: 5'- gUGCGAcguGCCaugcGCUGUCGGCGUUgauGCCu -3' miRNA: 3'- -ACGCU---UGG----UGGCAGUCGCAGagcCGG- -5' |
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18748 | 5' | -57.4 | NC_004682.1 | + | 34510 | 0.68 | 0.482802 |
Target: 5'- cGCGGcCCcaguccuucauGCCGUCgcggagcagggagAGCGUCUgGGCUg -3' miRNA: 3'- aCGCUuGG-----------UGGCAG-------------UCGCAGAgCCGG- -5' |
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18748 | 5' | -57.4 | NC_004682.1 | + | 21334 | 0.68 | 0.463899 |
Target: 5'- aGUGAgACCGCCuUCGGCGgCUCcuGGCUg -3' miRNA: 3'- aCGCU-UGGUGGcAGUCGCaGAG--CCGG- -5' |
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18748 | 5' | -57.4 | NC_004682.1 | + | 16902 | 0.68 | 0.444426 |
Target: 5'- cGCGuucgguGCCGgUGUCGGCGcuguggcgCUCGGCa -3' miRNA: 3'- aCGCu-----UGGUgGCAGUCGCa-------GAGCCGg -5' |
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18748 | 5' | -57.4 | NC_004682.1 | + | 36148 | 0.68 | 0.444426 |
Target: 5'- cGCGAcgugugGCCgaugcugucccaGCCgGUCGGCGUCcacaGGCCg -3' miRNA: 3'- aCGCU------UGG------------UGG-CAGUCGCAGag--CCGG- -5' |
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18748 | 5' | -57.4 | NC_004682.1 | + | 27415 | 0.68 | 0.444426 |
Target: 5'- gGCGGcacaAUCGCCGUCGGCGcacuggcguUCUcgcugucguucaCGGCCc -3' miRNA: 3'- aCGCU----UGGUGGCAGUCGC---------AGA------------GCCGG- -5' |
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18748 | 5' | -57.4 | NC_004682.1 | + | 13974 | 0.69 | 0.429184 |
Target: 5'- aUGCGAuggccaucgaguucgGCCaccaGCCGUcCGGUGUgUUCGGCCc -3' miRNA: 3'- -ACGCU---------------UGG----UGGCA-GUCGCA-GAGCCGG- -5' |
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18748 | 5' | -57.4 | NC_004682.1 | + | 34277 | 0.69 | 0.425422 |
Target: 5'- -uCGAGCCugguugGCCGUCAGgGUCUUGuCCu -3' miRNA: 3'- acGCUUGG------UGGCAGUCgCAGAGCcGG- -5' |
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18748 | 5' | -57.4 | NC_004682.1 | + | 39309 | 0.69 | 0.416102 |
Target: 5'- aGCGggUUGCCGuUCAGCGggaggUGGCUg -3' miRNA: 3'- aCGCuuGGUGGC-AGUCGCaga--GCCGG- -5' |
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18748 | 5' | -57.4 | NC_004682.1 | + | 38145 | 0.69 | 0.406909 |
Target: 5'- cGCGaAGCCGCCGUUGGCccuGUgUCGGaUCu -3' miRNA: 3'- aCGC-UUGGUGGCAGUCG---CAgAGCC-GG- -5' |
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18748 | 5' | -57.4 | NC_004682.1 | + | 39679 | 0.69 | 0.406909 |
Target: 5'- gGUGAACaACUGcggCAGCGUCaucCGGCCc -3' miRNA: 3'- aCGCUUGgUGGCa--GUCGCAGa--GCCGG- -5' |
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18748 | 5' | -57.4 | NC_004682.1 | + | 46179 | 0.69 | 0.397844 |
Target: 5'- -uCGAugCA-CGUCAGCuUCUCGGCg -3' miRNA: 3'- acGCUugGUgGCAGUCGcAGAGCCGg -5' |
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18748 | 5' | -57.4 | NC_004682.1 | + | 47163 | 0.7 | 0.371441 |
Target: 5'- gGCGGucaGCuCGCCuUCGGUGUaCUCGGUCa -3' miRNA: 3'- aCGCU---UG-GUGGcAGUCGCA-GAGCCGG- -5' |
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18748 | 5' | -57.4 | NC_004682.1 | + | 43436 | 0.7 | 0.371441 |
Target: 5'- cUGCGGggGCUcgauGCCG-UAG-GUCUCGGCCa -3' miRNA: 3'- -ACGCU--UGG----UGGCaGUCgCAGAGCCGG- -5' |
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18748 | 5' | -57.4 | NC_004682.1 | + | 33892 | 0.7 | 0.368868 |
Target: 5'- aGCGAAUCgggcaagcGCCGUUGGCGcaguccucaucgacUCaUCGGCCa -3' miRNA: 3'- aCGCUUGG--------UGGCAGUCGC--------------AG-AGCCGG- -5' |
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18748 | 5' | -57.4 | NC_004682.1 | + | 10518 | 0.71 | 0.330162 |
Target: 5'- gGUGAACCACgGUCGGaCGgaCUCGcuGCCg -3' miRNA: 3'- aCGCUUGGUGgCAGUC-GCa-GAGC--CGG- -5' |
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18748 | 5' | -57.4 | NC_004682.1 | + | 34500 | 0.71 | 0.330162 |
Target: 5'- gUGCGAACUGCguagCAGCGUggucgaccucUUCGGCCa -3' miRNA: 3'- -ACGCUUGGUGgca-GUCGCA----------GAGCCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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