miRNA display CGI


Results 21 - 40 of 74 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18748 5' -57.4 NC_004682.1 + 18747 0.67 0.504118
Target:  5'- cGUGAACC-CCG-CAaccGUGUCUCGGaUCg -3'
miRNA:   3'- aCGCUUGGuGGCaGU---CGCAGAGCC-GG- -5'
18748 5' -57.4 NC_004682.1 + 20484 0.67 0.534194
Target:  5'- gGCGAGCCAgaacgggcacaUCGUCaccccgaAGgGUCgUCGGCUg -3'
miRNA:   3'- aCGCUUGGU-----------GGCAG-------UCgCAG-AGCCGG- -5'
18748 5' -57.4 NC_004682.1 + 21334 0.68 0.463899
Target:  5'- aGUGAgACCGCCuUCGGCGgCUCcuGGCUg -3'
miRNA:   3'- aCGCU-UGGUGGcAGUCGCaGAG--CCGG- -5'
18748 5' -57.4 NC_004682.1 + 21900 0.67 0.51441
Target:  5'- gGCGuucaCGCUGUCAGCGUUccUGGCg -3'
miRNA:   3'- aCGCuug-GUGGCAGUCGCAGa-GCCGg -5'
18748 5' -57.4 NC_004682.1 + 23116 0.73 0.245252
Target:  5'- gGCGAgacagcAUCACCGUCAGgugaGUUgCGGCCa -3'
miRNA:   3'- aCGCU------UGGUGGCAGUCg---CAGaGCCGG- -5'
18748 5' -57.4 NC_004682.1 + 23511 0.66 0.620889
Target:  5'- cUGCGAagACaguCUGUC-GCaacuguacuuGUCUCGGCCa -3'
miRNA:   3'- -ACGCU--UGgu-GGCAGuCG----------CAGAGCCGG- -5'
18748 5' -57.4 NC_004682.1 + 24525 0.67 0.532099
Target:  5'- cGCGGACUACCGgggcuggggcuucaUCAGCucuacGUCgaaCGGCg -3'
miRNA:   3'- aCGCUUGGUGGC--------------AGUCG-----CAGa--GCCGg -5'
18748 5' -57.4 NC_004682.1 + 25235 0.67 0.535243
Target:  5'- cGCGAGCCggagACCGgCAagguagcccaccGCGUCaaGGCCc -3'
miRNA:   3'- aCGCUUGG----UGGCaGU------------CGCAGagCCGG- -5'
18748 5' -57.4 NC_004682.1 + 25735 0.67 0.51441
Target:  5'- -cUGGACCACaaCGUC--CGUCUCGGUCa -3'
miRNA:   3'- acGCUUGGUG--GCAGucGCAGAGCCGG- -5'
18748 5' -57.4 NC_004682.1 + 25834 0.77 0.136834
Target:  5'- aUGCGAgcagauGCCGCCGagUCGGCGUCguaccCGGCUu -3'
miRNA:   3'- -ACGCU------UGGUGGC--AGUCGCAGa----GCCGG- -5'
18748 5' -57.4 NC_004682.1 + 25870 0.66 0.598171
Target:  5'- gGCcuugguCCACuCGUCGGCGUUggucuugUCGGUCu -3'
miRNA:   3'- aCGcuu---GGUG-GCAGUCGCAG-------AGCCGG- -5'
18748 5' -57.4 NC_004682.1 + 25976 0.67 0.56062
Target:  5'- cGCGAACgggaCACCGUUcuuguagagcaucggAGCGgUCUUccaGGCCg -3'
miRNA:   3'- aCGCUUG----GUGGCAG---------------UCGC-AGAG---CCGG- -5'
18748 5' -57.4 NC_004682.1 + 26334 0.66 0.567017
Target:  5'- gGCGGuguacgucuucgACCGCCuguuccccuGUCGGCG-CgcagCGGCCu -3'
miRNA:   3'- aCGCU------------UGGUGG---------CAGUCGCaGa---GCCGG- -5'
18748 5' -57.4 NC_004682.1 + 26630 0.66 0.599251
Target:  5'- gGCGAcgguGCCcgagauGCUcugguagucgGUCAGCGUCUC-GCCa -3'
miRNA:   3'- aCGCU----UGG------UGG----------CAGUCGCAGAGcCGG- -5'
18748 5' -57.4 NC_004682.1 + 27415 0.68 0.444426
Target:  5'- gGCGGcacaAUCGCCGUCGGCGcacuggcguUCUcgcugucguucaCGGCCc -3'
miRNA:   3'- aCGCU----UGGUGGCAGUCGC---------AGA------------GCCGG- -5'
18748 5' -57.4 NC_004682.1 + 29502 0.66 0.588468
Target:  5'- aGCcagGAGCCGCCGaaGGCGgUCUCacuGCCc -3'
miRNA:   3'- aCG---CUUGGUGGCagUCGC-AGAGc--CGG- -5'
18748 5' -57.4 NC_004682.1 + 29687 0.74 0.204616
Target:  5'- gGUGAGCUGCgCGUCcuggAGCGUCUucuUGGCCa -3'
miRNA:   3'- aCGCUUGGUG-GCAG----UCGCAGA---GCCGG- -5'
18748 5' -57.4 NC_004682.1 + 30227 0.66 0.599251
Target:  5'- cGUGAACCcggccucaugcaGCCGgaUCAGCGcCUcccCGGUCa -3'
miRNA:   3'- aCGCUUGG------------UGGC--AGUCGCaGA---GCCGG- -5'
18748 5' -57.4 NC_004682.1 + 31216 0.67 0.524788
Target:  5'- cUGCGAGaCCGCCGgcacCAGCGggaUCaGCUu -3'
miRNA:   3'- -ACGCUU-GGUGGCa---GUCGCag-AGcCGG- -5'
18748 5' -57.4 NC_004682.1 + 32578 0.66 0.610061
Target:  5'- cUGCGcGgCACCGaCAGCcagGUCgauacCGGCCu -3'
miRNA:   3'- -ACGCuUgGUGGCaGUCG---CAGa----GCCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.