miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18748 5' -57.4 NC_004682.1 + 2053 0.66 0.588468
Target:  5'- cGCGGACUgACUGguccgCAGgGUCcgacCGGCCc -3'
miRNA:   3'- aCGCUUGG-UGGCa----GUCgCAGa---GCCGG- -5'
18748 5' -57.4 NC_004682.1 + 6113 0.67 0.535243
Target:  5'- cGUG-GCCACCGgCGGCG--UCGGCa -3'
miRNA:   3'- aCGCuUGGUGGCaGUCGCagAGCCGg -5'
18748 5' -57.4 NC_004682.1 + 6155 0.66 0.577721
Target:  5'- gGCGGGCCGCUGcgagucgaCGGCuaUUUCGGCUa -3'
miRNA:   3'- aCGCUUGGUGGCa-------GUCGc-AGAGCCGG- -5'
18748 5' -57.4 NC_004682.1 + 6505 0.68 0.483808
Target:  5'- gGCGGGCUACuCGcaaggcgCGGUgGUCgUCGGCCa -3'
miRNA:   3'- aCGCUUGGUG-GCa------GUCG-CAG-AGCCGG- -5'
18748 5' -57.4 NC_004682.1 + 6834 0.66 0.610061
Target:  5'- cGCGuAAgCACCG-CAGCGugUCUCaGCUc -3'
miRNA:   3'- aCGC-UUgGUGGCaGUCGC--AGAGcCGG- -5'
18748 5' -57.4 NC_004682.1 + 8633 0.67 0.544716
Target:  5'- aGCGGcaagaagauugacGCCGCCGUCuGCGcgguccucgcgUUCGGCg -3'
miRNA:   3'- aCGCU-------------UGGUGGCAGuCGCa----------GAGCCGg -5'
18748 5' -57.4 NC_004682.1 + 8861 0.66 0.588468
Target:  5'- aGCGccGGCCcgacGCCGUaGGCGUCaCGGUCc -3'
miRNA:   3'- aCGC--UUGG----UGGCAgUCGCAGaGCCGG- -5'
18748 5' -57.4 NC_004682.1 + 9457 0.66 0.588468
Target:  5'- gGCGAucCCGCUGUcCGGUGUCaagGGUCa -3'
miRNA:   3'- aCGCUu-GGUGGCA-GUCGCAGag-CCGG- -5'
18748 5' -57.4 NC_004682.1 + 10233 0.66 0.577721
Target:  5'- cGCGcucGCCAacuaCGUCAuGCGUUg-GGCCa -3'
miRNA:   3'- aCGCu--UGGUg---GCAGU-CGCAGagCCGG- -5'
18748 5' -57.4 NC_004682.1 + 10433 0.77 0.140623
Target:  5'- -aCGGGCuCACCGUgAGCGcCUUGGCCu -3'
miRNA:   3'- acGCUUG-GUGGCAgUCGCaGAGCCGG- -5'
18748 5' -57.4 NC_004682.1 + 10518 0.71 0.330162
Target:  5'- gGUGAACCACgGUCGGaCGgaCUCGcuGCCg -3'
miRNA:   3'- aCGCUUGGUGgCAGUC-GCa-GAGC--CGG- -5'
18748 5' -57.4 NC_004682.1 + 10753 0.73 0.245252
Target:  5'- cUGCGGGCCACa--CAGCGccUCUCGGgCg -3'
miRNA:   3'- -ACGCUUGGUGgcaGUCGC--AGAGCCgG- -5'
18748 5' -57.4 NC_004682.1 + 10812 0.72 0.256082
Target:  5'- aGCGAucaagcuacggucgGCCACCGagGGC--CUCGGCCu -3'
miRNA:   3'- aCGCU--------------UGGUGGCagUCGcaGAGCCGG- -5'
18748 5' -57.4 NC_004682.1 + 12801 0.67 0.535243
Target:  5'- -cUGAACgCGCUGUCGGCGcugaggcacCUCGGCa -3'
miRNA:   3'- acGCUUG-GUGGCAGUCGCa--------GAGCCGg -5'
18748 5' -57.4 NC_004682.1 + 12958 0.66 0.61439
Target:  5'- cGCGGA-CAUCG-CGGCGcguucucgggguacCUCGGCCa -3'
miRNA:   3'- aCGCUUgGUGGCaGUCGCa-------------GAGCCGG- -5'
18748 5' -57.4 NC_004682.1 + 13974 0.69 0.429184
Target:  5'- aUGCGAuggccaucgaguucgGCCaccaGCCGUcCGGUGUgUUCGGCCc -3'
miRNA:   3'- -ACGCU---------------UGG----UGGCA-GUCGCA-GAGCCGG- -5'
18748 5' -57.4 NC_004682.1 + 14876 0.75 0.189061
Target:  5'- cGCGAacgccucgACCACgccuggugUGuUCGGCGUCUCGGCUg -3'
miRNA:   3'- aCGCU--------UGGUG--------GC-AGUCGCAGAGCCGG- -5'
18748 5' -57.4 NC_004682.1 + 16228 0.67 0.535243
Target:  5'- cGUGGGCCACC-UCGGCGU---GGCg -3'
miRNA:   3'- aCGCUUGGUGGcAGUCGCAgagCCGg -5'
18748 5' -57.4 NC_004682.1 + 16902 0.68 0.444426
Target:  5'- cGCGuucgguGCCGgUGUCGGCGcuguggcgCUCGGCa -3'
miRNA:   3'- aCGCu-----UGGUgGCAGUCGCa-------GAGCCGg -5'
18748 5' -57.4 NC_004682.1 + 18552 0.67 0.546828
Target:  5'- cGCaGGAUCugCGgaagagcauggcgggCAGCGUCUCuGGCg -3'
miRNA:   3'- aCG-CUUGGugGCa--------------GUCGCAGAG-CCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.