miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18748 5' -57.4 NC_004682.1 + 8633 0.67 0.544716
Target:  5'- aGCGGcaagaagauugacGCCGCCGUCuGCGcgguccucgcgUUCGGCg -3'
miRNA:   3'- aCGCU-------------UGGUGGCAGuCGCa----------GAGCCGg -5'
18748 5' -57.4 NC_004682.1 + 21334 0.68 0.463899
Target:  5'- aGUGAgACCGCCuUCGGCGgCUCcuGGCUg -3'
miRNA:   3'- aCGCU-UGGUGGcAGUCGCaGAG--CCGG- -5'
18748 5' -57.4 NC_004682.1 + 45468 0.68 0.483808
Target:  5'- gUGCGAcguGCCaugcGCUGUCGGCGUUgauGCCu -3'
miRNA:   3'- -ACGCU---UGG----UGGCAGUCGCAGagcCGG- -5'
18748 5' -57.4 NC_004682.1 + 6505 0.68 0.483808
Target:  5'- gGCGGGCUACuCGcaaggcgCGGUgGUCgUCGGCCa -3'
miRNA:   3'- aCGCUUGGUG-GCa------GUCG-CAG-AGCCGG- -5'
18748 5' -57.4 NC_004682.1 + 42490 0.67 0.504118
Target:  5'- cUGCG-GCCACC-UCAGCGUCgaacagaCGGaUCa -3'
miRNA:   3'- -ACGCuUGGUGGcAGUCGCAGa------GCC-GG- -5'
18748 5' -57.4 NC_004682.1 + 21900 0.67 0.51441
Target:  5'- gGCGuucaCGCUGUCAGCGUUccUGGCg -3'
miRNA:   3'- aCGCuug-GUGGCAGUCGCAGa-GCCGg -5'
18748 5' -57.4 NC_004682.1 + 31216 0.67 0.524788
Target:  5'- cUGCGAGaCCGCCGgcacCAGCGggaUCaGCUu -3'
miRNA:   3'- -ACGCUU-GGUGGCa---GUCGCag-AGcCGG- -5'
18748 5' -57.4 NC_004682.1 + 24525 0.67 0.532099
Target:  5'- cGCGGACUACCGgggcuggggcuucaUCAGCucuacGUCgaaCGGCg -3'
miRNA:   3'- aCGCUUGGUGGC--------------AGUCG-----CAGa--GCCGg -5'
18748 5' -57.4 NC_004682.1 + 25235 0.67 0.535243
Target:  5'- cGCGAGCCggagACCGgCAagguagcccaccGCGUCaaGGCCc -3'
miRNA:   3'- aCGCUUGG----UGGCaGU------------CGCAGagCCGG- -5'
18748 5' -57.4 NC_004682.1 + 16902 0.68 0.444426
Target:  5'- cGCGuucgguGCCGgUGUCGGCGcuguggcgCUCGGCa -3'
miRNA:   3'- aCGCu-----UGGUgGCAGUCGCa-------GAGCCGg -5'
18748 5' -57.4 NC_004682.1 + 27415 0.68 0.444426
Target:  5'- gGCGGcacaAUCGCCGUCGGCGcacuggcguUCUcgcugucguucaCGGCCc -3'
miRNA:   3'- aCGCU----UGGUGGCAGUCGC---------AGA------------GCCGG- -5'
18748 5' -57.4 NC_004682.1 + 13974 0.69 0.429184
Target:  5'- aUGCGAuggccaucgaguucgGCCaccaGCCGUcCGGUGUgUUCGGCCc -3'
miRNA:   3'- -ACGCU---------------UGG----UGGCA-GUCGCA-GAGCCGG- -5'
18748 5' -57.4 NC_004682.1 + 14876 0.75 0.189061
Target:  5'- cGCGAacgccucgACCACgccuggugUGuUCGGCGUCUCGGCUg -3'
miRNA:   3'- aCGCU--------UGGUG--------GC-AGUCGCAGAGCCGG- -5'
18748 5' -57.4 NC_004682.1 + 36568 0.74 0.215593
Target:  5'- cUGCGGcuuGCCGCCGUCGGaGUCguaGGUCu -3'
miRNA:   3'- -ACGCU---UGGUGGCAGUCgCAGag-CCGG- -5'
18748 5' -57.4 NC_004682.1 + 36960 0.74 0.221268
Target:  5'- cGUGAACCgGCC-UCGGUggaucggaaccGUCUCGGCCu -3'
miRNA:   3'- aCGCUUGG-UGGcAGUCG-----------CAGAGCCGG- -5'
18748 5' -57.4 NC_004682.1 + 34500 0.71 0.330162
Target:  5'- gUGCGAACUGCguagCAGCGUggucgaccucUUCGGCCa -3'
miRNA:   3'- -ACGCUUGGUGgca-GUCGCA----------GAGCCGG- -5'
18748 5' -57.4 NC_004682.1 + 33892 0.7 0.368868
Target:  5'- aGCGAAUCgggcaagcGCCGUUGGCGcaguccucaucgacUCaUCGGCCa -3'
miRNA:   3'- aCGCUUGG--------UGGCAGUCGC--------------AG-AGCCGG- -5'
18748 5' -57.4 NC_004682.1 + 43436 0.7 0.371441
Target:  5'- cUGCGGggGCUcgauGCCG-UAG-GUCUCGGCCa -3'
miRNA:   3'- -ACGCU--UGG----UGGCaGUCgCAGAGCCGG- -5'
18748 5' -57.4 NC_004682.1 + 46179 0.69 0.397844
Target:  5'- -uCGAugCA-CGUCAGCuUCUCGGCg -3'
miRNA:   3'- acGCUugGUgGCAGUCGcAGAGCCGg -5'
18748 5' -57.4 NC_004682.1 + 39679 0.69 0.406909
Target:  5'- gGUGAACaACUGcggCAGCGUCaucCGGCCc -3'
miRNA:   3'- aCGCUUGgUGGCa--GUCGCAGa--GCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.