miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18748 5' -57.4 NC_004682.1 + 49577 1.11 0.00047
Target:  5'- uUGCGAACCACCGUCAGCGUCUCGGCCc -3'
miRNA:   3'- -ACGCUUGGUGGCAGUCGCAGAGCCGG- -5'
18748 5' -57.4 NC_004682.1 + 25834 0.77 0.136834
Target:  5'- aUGCGAgcagauGCCGCCGagUCGGCGUCguaccCGGCUu -3'
miRNA:   3'- -ACGCU------UGGUGGC--AGUCGCAGa----GCCGG- -5'
18748 5' -57.4 NC_004682.1 + 10433 0.77 0.140623
Target:  5'- -aCGGGCuCACCGUgAGCGcCUUGGCCu -3'
miRNA:   3'- acGCUUG-GUGGCAgUCGCaGAGCCGG- -5'
18748 5' -57.4 NC_004682.1 + 14876 0.75 0.189061
Target:  5'- cGCGAacgccucgACCACgccuggugUGuUCGGCGUCUCGGCUg -3'
miRNA:   3'- aCGCU--------UGGUG--------GC-AGUCGCAGAGCCGG- -5'
18748 5' -57.4 NC_004682.1 + 41266 0.75 0.189061
Target:  5'- aUGCGAGCCagguACgCGUCgaacAGCGUCU-GGCCg -3'
miRNA:   3'- -ACGCUUGG----UG-GCAG----UCGCAGAgCCGG- -5'
18748 5' -57.4 NC_004682.1 + 29687 0.74 0.204616
Target:  5'- gGUGAGCUGCgCGUCcuggAGCGUCUucuUGGCCa -3'
miRNA:   3'- aCGCUUGGUG-GCAG----UCGCAGA---GCCGG- -5'
18748 5' -57.4 NC_004682.1 + 36568 0.74 0.215593
Target:  5'- cUGCGGcuuGCCGCCGUCGGaGUCguaGGUCu -3'
miRNA:   3'- -ACGCU---UGGUGGCAGUCgCAGag-CCGG- -5'
18748 5' -57.4 NC_004682.1 + 38792 0.74 0.221268
Target:  5'- aGCGAcACgACC-UUGGuCGUCUCGGCCa -3'
miRNA:   3'- aCGCU-UGgUGGcAGUC-GCAGAGCCGG- -5'
18748 5' -57.4 NC_004682.1 + 36960 0.74 0.221268
Target:  5'- cGUGAACCgGCC-UCGGUggaucggaaccGUCUCGGCCu -3'
miRNA:   3'- aCGCUUGG-UGGcAGUCG-----------CAGAGCCGG- -5'
18748 5' -57.4 NC_004682.1 + 23116 0.73 0.245252
Target:  5'- gGCGAgacagcAUCACCGUCAGgugaGUUgCGGCCa -3'
miRNA:   3'- aCGCU------UGGUGGCAGUCg---CAGaGCCGG- -5'
18748 5' -57.4 NC_004682.1 + 10753 0.73 0.245252
Target:  5'- cUGCGGGCCACa--CAGCGccUCUCGGgCg -3'
miRNA:   3'- -ACGCUUGGUGgcaGUCGC--AGAGCCgG- -5'
18748 5' -57.4 NC_004682.1 + 10812 0.72 0.256082
Target:  5'- aGCGAucaagcuacggucgGCCACCGagGGC--CUCGGCCu -3'
miRNA:   3'- aCGCU--------------UGGUGGCagUCGcaGAGCCGG- -5'
18748 5' -57.4 NC_004682.1 + 44699 0.72 0.264626
Target:  5'- aGCGGcCCGCCGUCguacgccuuGGCGUa--GGCCg -3'
miRNA:   3'- aCGCUuGGUGGCAG---------UCGCAgagCCGG- -5'
18748 5' -57.4 NC_004682.1 + 36989 0.71 0.299644
Target:  5'- cGCGGGCCugUGcCAG-GUuggcCUCGGCCu -3'
miRNA:   3'- aCGCUUGGugGCaGUCgCA----GAGCCGG- -5'
18748 5' -57.4 NC_004682.1 + 34500 0.71 0.330162
Target:  5'- gUGCGAACUGCguagCAGCGUggucgaccucUUCGGCCa -3'
miRNA:   3'- -ACGCUUGGUGgca-GUCGCA----------GAGCCGG- -5'
18748 5' -57.4 NC_004682.1 + 10518 0.71 0.330162
Target:  5'- gGUGAACCACgGUCGGaCGgaCUCGcuGCCg -3'
miRNA:   3'- aCGCUUGGUGgCAGUC-GCa-GAGC--CGG- -5'
18748 5' -57.4 NC_004682.1 + 33892 0.7 0.368868
Target:  5'- aGCGAAUCgggcaagcGCCGUUGGCGcaguccucaucgacUCaUCGGCCa -3'
miRNA:   3'- aCGCUUGG--------UGGCAGUCGC--------------AG-AGCCGG- -5'
18748 5' -57.4 NC_004682.1 + 47163 0.7 0.371441
Target:  5'- gGCGGucaGCuCGCCuUCGGUGUaCUCGGUCa -3'
miRNA:   3'- aCGCU---UG-GUGGcAGUCGCA-GAGCCGG- -5'
18748 5' -57.4 NC_004682.1 + 43436 0.7 0.371441
Target:  5'- cUGCGGggGCUcgauGCCG-UAG-GUCUCGGCCa -3'
miRNA:   3'- -ACGCU--UGG----UGGCaGUCgCAGAGCCGG- -5'
18748 5' -57.4 NC_004682.1 + 46179 0.69 0.397844
Target:  5'- -uCGAugCA-CGUCAGCuUCUCGGCg -3'
miRNA:   3'- acGCUugGUgGCAGUCGcAGAGCCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.