miRNA display CGI


Results 21 - 40 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18748 5' -57.4 NC_004682.1 + 36568 0.74 0.215593
Target:  5'- cUGCGGcuuGCCGCCGUCGGaGUCguaGGUCu -3'
miRNA:   3'- -ACGCU---UGGUGGCAGUCgCAGag-CCGG- -5'
18748 5' -57.4 NC_004682.1 + 36960 0.74 0.221268
Target:  5'- cGUGAACCgGCC-UCGGUggaucggaaccGUCUCGGCCu -3'
miRNA:   3'- aCGCUUGG-UGGcAGUCG-----------CAGAGCCGG- -5'
18748 5' -57.4 NC_004682.1 + 34500 0.71 0.330162
Target:  5'- gUGCGAACUGCguagCAGCGUggucgaccucUUCGGCCa -3'
miRNA:   3'- -ACGCUUGGUGgca-GUCGCA----------GAGCCGG- -5'
18748 5' -57.4 NC_004682.1 + 33892 0.7 0.368868
Target:  5'- aGCGAAUCgggcaagcGCCGUUGGCGcaguccucaucgacUCaUCGGCCa -3'
miRNA:   3'- aCGCUUGG--------UGGCAGUCGC--------------AG-AGCCGG- -5'
18748 5' -57.4 NC_004682.1 + 43436 0.7 0.371441
Target:  5'- cUGCGGggGCUcgauGCCG-UAG-GUCUCGGCCa -3'
miRNA:   3'- -ACGCU--UGG----UGGCaGUCgCAGAGCCGG- -5'
18748 5' -57.4 NC_004682.1 + 46179 0.69 0.397844
Target:  5'- -uCGAugCA-CGUCAGCuUCUCGGCg -3'
miRNA:   3'- acGCUugGUgGCAGUCGcAGAGCCGg -5'
18748 5' -57.4 NC_004682.1 + 39679 0.69 0.406909
Target:  5'- gGUGAACaACUGcggCAGCGUCaucCGGCCc -3'
miRNA:   3'- aCGCUUGgUGGCa--GUCGCAGa--GCCGG- -5'
18748 5' -57.4 NC_004682.1 + 6505 0.68 0.483808
Target:  5'- gGCGGGCUACuCGcaaggcgCGGUgGUCgUCGGCCa -3'
miRNA:   3'- aCGCUUGGUG-GCa------GUCG-CAG-AGCCGG- -5'
18748 5' -57.4 NC_004682.1 + 45468 0.68 0.483808
Target:  5'- gUGCGAcguGCCaugcGCUGUCGGCGUUgauGCCu -3'
miRNA:   3'- -ACGCU---UGG----UGGCAGUCGCAGagcCGG- -5'
18748 5' -57.4 NC_004682.1 + 21334 0.68 0.463899
Target:  5'- aGUGAgACCGCCuUCGGCGgCUCcuGGCUg -3'
miRNA:   3'- aCGCU-UGGUGGcAGUCGCaGAG--CCGG- -5'
18748 5' -57.4 NC_004682.1 + 16902 0.68 0.444426
Target:  5'- cGCGuucgguGCCGgUGUCGGCGcuguggcgCUCGGCa -3'
miRNA:   3'- aCGCu-----UGGUgGCAGUCGCa-------GAGCCGg -5'
18748 5' -57.4 NC_004682.1 + 27415 0.68 0.444426
Target:  5'- gGCGGcacaAUCGCCGUCGGCGcacuggcguUCUcgcugucguucaCGGCCc -3'
miRNA:   3'- aCGCU----UGGUGGCAGUCGC---------AGA------------GCCGG- -5'
18748 5' -57.4 NC_004682.1 + 13974 0.69 0.429184
Target:  5'- aUGCGAuggccaucgaguucgGCCaccaGCCGUcCGGUGUgUUCGGCCc -3'
miRNA:   3'- -ACGCU---------------UGG----UGGCA-GUCGCA-GAGCCGG- -5'
18748 5' -57.4 NC_004682.1 + 26630 0.66 0.599251
Target:  5'- gGCGAcgguGCCcgagauGCUcugguagucgGUCAGCGUCUC-GCCa -3'
miRNA:   3'- aCGCU----UGG------UGG----------CAGUCGCAGAGcCGG- -5'
18748 5' -57.4 NC_004682.1 + 40908 0.66 0.599251
Target:  5'- cUGCGucuGCCuggcggcguaCGUCGGCGUCgacggaUCGcGCCa -3'
miRNA:   3'- -ACGCu--UGGug--------GCAGUCGCAG------AGC-CGG- -5'
18748 5' -57.4 NC_004682.1 + 32578 0.66 0.610061
Target:  5'- cUGCGcGgCACCGaCAGCcagGUCgauacCGGCCu -3'
miRNA:   3'- -ACGCuUgGUGGCaGUCG---CAGa----GCCGG- -5'
18748 5' -57.4 NC_004682.1 + 6834 0.66 0.610061
Target:  5'- cGCGuAAgCACCG-CAGCGugUCUCaGCUc -3'
miRNA:   3'- aCGC-UUgGUGGCaGUCGC--AGAGcCGG- -5'
18748 5' -57.4 NC_004682.1 + 38879 0.66 0.610061
Target:  5'- aGCGcGAUgGCC-UCGGCGaUCUUGGUCc -3'
miRNA:   3'- aCGC-UUGgUGGcAGUCGC-AGAGCCGG- -5'
18748 5' -57.4 NC_004682.1 + 12958 0.66 0.61439
Target:  5'- cGCGGA-CAUCG-CGGCGcguucucgggguacCUCGGCCa -3'
miRNA:   3'- aCGCUUgGUGGCaGUCGCa-------------GAGCCGG- -5'
18748 5' -57.4 NC_004682.1 + 25834 0.77 0.136834
Target:  5'- aUGCGAgcagauGCCGCCGagUCGGCGUCguaccCGGCUu -3'
miRNA:   3'- -ACGCU------UGGUGGC--AGUCGCAGa----GCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.