Results 1 - 20 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18750 | 3' | -56.1 | NC_004683.1 | + | 692 | 1.11 | 0.000599 |
Target: 5'- aACAGCGCGUUCAGGCCGAGUUCCUGCu -3' miRNA: 3'- -UGUCGCGCAAGUCCGGCUCAAGGACG- -5' |
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18750 | 3' | -56.1 | NC_004683.1 | + | 4957 | 0.77 | 0.167511 |
Target: 5'- cGCAuGCGCGUcgAGGCCG-GUUCCUcGCa -3' miRNA: 3'- -UGU-CGCGCAagUCCGGCuCAAGGA-CG- -5' |
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18750 | 3' | -56.1 | NC_004683.1 | + | 51813 | 0.75 | 0.202185 |
Target: 5'- gGCGGCGCGgcacuggUCGcGGCCGuAGcacUCCUGCa -3' miRNA: 3'- -UGUCGCGCa------AGU-CCGGC-UCa--AGGACG- -5' |
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18750 | 3' | -56.1 | NC_004683.1 | + | 47596 | 0.75 | 0.230632 |
Target: 5'- -uGGCgGCGUUCGGGCCGA--UgCUGCa -3' miRNA: 3'- ugUCG-CGCAAGUCCGGCUcaAgGACG- -5' |
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18750 | 3' | -56.1 | NC_004683.1 | + | 25996 | 0.74 | 0.262382 |
Target: 5'- cGCGGCGaucucgCuGGCCGcGUUCCUGCg -3' miRNA: 3'- -UGUCGCgcaa--GuCCGGCuCAAGGACG- -5' |
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18750 | 3' | -56.1 | NC_004683.1 | + | 10193 | 0.72 | 0.312674 |
Target: 5'- -aGGCGCGUgagCGGGCCGAGgaacaggCC-GCc -3' miRNA: 3'- ugUCGCGCAa--GUCCGGCUCaa-----GGaCG- -5' |
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18750 | 3' | -56.1 | NC_004683.1 | + | 4526 | 0.7 | 0.443657 |
Target: 5'- cGCuGCGCGUcgUCGgacucGGCCGGGUguucaaCUGCg -3' miRNA: 3'- -UGuCGCGCA--AGU-----CCGGCUCAag----GACG- -5' |
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18750 | 3' | -56.1 | NC_004683.1 | + | 51713 | 0.69 | 0.473355 |
Target: 5'- gGCAGCGCGaccgCGGGCuCGGGggCggGCu -3' miRNA: 3'- -UGUCGCGCaa--GUCCG-GCUCaaGgaCG- -5' |
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18750 | 3' | -56.1 | NC_004683.1 | + | 8625 | 0.69 | 0.493698 |
Target: 5'- cACGGCGa--UCAGGCCGgugcGGUggccgcCCUGCa -3' miRNA: 3'- -UGUCGCgcaAGUCCGGC----UCAa-----GGACG- -5' |
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18750 | 3' | -56.1 | NC_004683.1 | + | 400 | 0.69 | 0.493698 |
Target: 5'- cGCAGCGCcugCuGGCCGAGaaccgucUCCaUGCg -3' miRNA: 3'- -UGUCGCGcaaGuCCGGCUCa------AGG-ACG- -5' |
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18750 | 3' | -56.1 | NC_004683.1 | + | 22439 | 0.69 | 0.504019 |
Target: 5'- gACGGCGCGUaUGGGCUgGAGgugUCgCUGUu -3' miRNA: 3'- -UGUCGCGCAaGUCCGG-CUCa--AG-GACG- -5' |
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18750 | 3' | -56.1 | NC_004683.1 | + | 18982 | 0.69 | 0.504019 |
Target: 5'- gACGGUGCGcacgaacuccCGGGCCGcc-UCCUGCg -3' miRNA: 3'- -UGUCGCGCaa--------GUCCGGCucaAGGACG- -5' |
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18750 | 3' | -56.1 | NC_004683.1 | + | 53624 | 0.68 | 0.522825 |
Target: 5'- uGCGGCGCGaUCAGGCCcgccgcgaCCUGg -3' miRNA: 3'- -UGUCGCGCaAGUCCGGcucaa---GGACg -5' |
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18750 | 3' | -56.1 | NC_004683.1 | + | 54430 | 0.68 | 0.53233 |
Target: 5'- uGCAGCGCuUUCAuGGCCcgcucaaccugcgcGGGUUCCcaagUGCc -3' miRNA: 3'- -UGUCGCGcAAGU-CCGG--------------CUCAAGG----ACG- -5' |
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18750 | 3' | -56.1 | NC_004683.1 | + | 56321 | 0.68 | 0.556887 |
Target: 5'- gUAGCGCGUUCucgauGUCGGGUUgCCaGCg -3' miRNA: 3'- uGUCGCGCAAGuc---CGGCUCAA-GGaCG- -5' |
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18750 | 3' | -56.1 | NC_004683.1 | + | 46547 | 0.68 | 0.567667 |
Target: 5'- gAUGGCGCGgaucCGGGCCGGcaUCgaGCg -3' miRNA: 3'- -UGUCGCGCaa--GUCCGGCUcaAGgaCG- -5' |
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18750 | 3' | -56.1 | NC_004683.1 | + | 49397 | 0.67 | 0.586108 |
Target: 5'- cACAGCGCGcagUCGGGgCGgucagccacgggucAGUUCCUcCa -3' miRNA: 3'- -UGUCGCGCa--AGUCCgGC--------------UCAAGGAcG- -5' |
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18750 | 3' | -56.1 | NC_004683.1 | + | 52126 | 0.67 | 0.589375 |
Target: 5'- -gGGCGCG-UCGGGCaCG-GUUCCcaGCc -3' miRNA: 3'- ugUCGCGCaAGUCCG-GCuCAAGGa-CG- -5' |
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18750 | 3' | -56.1 | NC_004683.1 | + | 16000 | 0.67 | 0.611226 |
Target: 5'- cACAGCGUGaaugucCAGucgacGUCGAGgucgUCCUGCa -3' miRNA: 3'- -UGUCGCGCaa----GUC-----CGGCUCa---AGGACG- -5' |
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18750 | 3' | -56.1 | NC_004683.1 | + | 7482 | 0.67 | 0.618895 |
Target: 5'- gGCAGCGCGcccggccgccgaaucCAGGUCGAGcgCCUcCg -3' miRNA: 3'- -UGUCGCGCaa-------------GUCCGGCUCaaGGAcG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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