miRNA display CGI


Results 1 - 20 of 37 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18750 5' -60.3 NC_004683.1 + 658 1.08 0.000403
Target:  5'- cCGGCGGGAACCCCGCCAAGUCGCACAg -3'
miRNA:   3'- -GCCGCCCUUGGGGCGGUUCAGCGUGU- -5'
18750 5' -60.3 NC_004683.1 + 12112 0.77 0.086765
Target:  5'- cCGGCGGuAGCCCCGCgCGGG-CGCGCu -3'
miRNA:   3'- -GCCGCCcUUGGGGCG-GUUCaGCGUGu -5'
18750 5' -60.3 NC_004683.1 + 12034 0.77 0.089184
Target:  5'- gCGGCGGuAGCCCCGCgCGGG-CGCGCu -3'
miRNA:   3'- -GCCGCCcUUGGGGCG-GUUCaGCGUGu -5'
18750 5' -60.3 NC_004683.1 + 13135 0.76 0.102272
Target:  5'- uCGGCGGGAccggugccgaugACCCgGCCuuuacGUCGCACu -3'
miRNA:   3'- -GCCGCCCU------------UGGGgCGGuu---CAGCGUGu -5'
18750 5' -60.3 NC_004683.1 + 31650 0.75 0.127027
Target:  5'- gGGCGGGGAgUuuGCCGAGUCGUc-- -3'
miRNA:   3'- gCCGCCCUUgGggCGGUUCAGCGugu -5'
18750 5' -60.3 NC_004683.1 + 19089 0.72 0.193778
Target:  5'- aCGGCGcgccuGGAucuACCCCGCUggGaugCGCGCGg -3'
miRNA:   3'- -GCCGC-----CCU---UGGGGCGGuuCa--GCGUGU- -5'
18750 5' -60.3 NC_004683.1 + 25660 0.72 0.198837
Target:  5'- uGGCGGuccugcccaAACCCCG-CAAGUCGCGCc -3'
miRNA:   3'- gCCGCCc--------UUGGGGCgGUUCAGCGUGu -5'
18750 5' -60.3 NC_004683.1 + 46109 0.72 0.204011
Target:  5'- uGGCGcGGGACCgcucggCCGCCGcGUCGgGCAg -3'
miRNA:   3'- gCCGC-CCUUGG------GGCGGUuCAGCgUGU- -5'
18750 5' -60.3 NC_004683.1 + 44785 0.72 0.209302
Target:  5'- gCGGCGGGccgcGugCCCGCgaucgcguuCAAGUUGCGCc -3'
miRNA:   3'- -GCCGCCC----UugGGGCG---------GUUCAGCGUGu -5'
18750 5' -60.3 NC_004683.1 + 5756 0.7 0.249719
Target:  5'- -cGCGGGcACCgCCGCCGAGaUCGCucCAg -3'
miRNA:   3'- gcCGCCCuUGG-GGCGGUUC-AGCGu-GU- -5'
18750 5' -60.3 NC_004683.1 + 53983 0.7 0.255993
Target:  5'- gGGCGGGA---UCGCCGAGUUGCGa- -3'
miRNA:   3'- gCCGCCCUuggGGCGGUUCAGCGUgu -5'
18750 5' -60.3 NC_004683.1 + 20204 0.69 0.28931
Target:  5'- cCGGCGGGGucACCUCGUUcGGaUCGCugGc -3'
miRNA:   3'- -GCCGCCCU--UGGGGCGGuUC-AGCGugU- -5'
18750 5' -60.3 NC_004683.1 + 13832 0.69 0.323644
Target:  5'- uCGGCGGGGccuguuGCCCgGCgguguuuggcagcgCAGGcCGCGCAc -3'
miRNA:   3'- -GCCGCCCU------UGGGgCG--------------GUUCaGCGUGU- -5'
18750 5' -60.3 NC_004683.1 + 24073 0.69 0.325935
Target:  5'- gGGCGGGcgguggcgugguGAUCgCGCCGAGggGCACGu -3'
miRNA:   3'- gCCGCCC------------UUGGgGCGGUUCagCGUGU- -5'
18750 5' -60.3 NC_004683.1 + 45527 0.68 0.341521
Target:  5'- gCGGCGGugcGGACCUCGC-GAGUCuuGCGCGc -3'
miRNA:   3'- -GCCGCC---CUUGGGGCGgUUCAG--CGUGU- -5'
18750 5' -60.3 NC_004683.1 + 24427 0.68 0.357638
Target:  5'- aCGGCGGGAccaaGCCgCCGgccaCCGAG-CGcCGCAa -3'
miRNA:   3'- -GCCGCCCU----UGG-GGC----GGUUCaGC-GUGU- -5'
18750 5' -60.3 NC_004683.1 + 52525 0.68 0.37428
Target:  5'- gCGGCacGGGAGCaCCGCgCGucUCGCACAg -3'
miRNA:   3'- -GCCG--CCCUUGgGGCG-GUucAGCGUGU- -5'
18750 5' -60.3 NC_004683.1 + 46057 0.67 0.391439
Target:  5'- -uGUGGGAcguGCCCCgguucGCCGAGgCGCACc -3'
miRNA:   3'- gcCGCCCU---UGGGG-----CGGUUCaGCGUGu -5'
18750 5' -60.3 NC_004683.1 + 12236 0.67 0.400209
Target:  5'- gGGCGGGAGCgCCCggcgugccgauGCCcGG-CGCugGu -3'
miRNA:   3'- gCCGCCCUUG-GGG-----------CGGuUCaGCGugU- -5'
18750 5' -60.3 NC_004683.1 + 9725 0.67 0.400209
Target:  5'- aGGauGGGACCCUGCCcGAGgUGUACGc -3'
miRNA:   3'- gCCgcCCUUGGGGCGG-UUCaGCGUGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.