Results 1 - 20 of 37 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18750 | 5' | -60.3 | NC_004683.1 | + | 18082 | 0.66 | 0.494312 |
Target: 5'- cCGGCGGGcACCaCgGCCAccuaucAGaUCgGCACGa -3' miRNA: 3'- -GCCGCCCuUGG-GgCGGU------UC-AG-CGUGU- -5' |
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18750 | 5' | -60.3 | NC_004683.1 | + | 7844 | 0.67 | 0.415402 |
Target: 5'- aCGGCGaguuccgccgugucGGAcccgacACCCCGaCCAAGgcgcagggcaUCGCGCAg -3' miRNA: 3'- -GCCGC--------------CCU------UGGGGC-GGUUC----------AGCGUGU- -5' |
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18750 | 5' | -60.3 | NC_004683.1 | + | 24251 | 0.67 | 0.41812 |
Target: 5'- gCGGUGGGcccgcGCCUaCGCCGAGUCcUACGc -3' miRNA: 3'- -GCCGCCCu----UGGG-GCGGUUCAGcGUGU- -5' |
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18750 | 5' | -60.3 | NC_004683.1 | + | 585 | 0.66 | 0.455357 |
Target: 5'- uGGCGGGGuUCCCGCCGGaUCccgaGCAg -3' miRNA: 3'- gCCGCCCUuGGGGCGGUUcAGcg--UGU- -5' |
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18750 | 5' | -60.3 | NC_004683.1 | + | 56711 | 0.66 | 0.474635 |
Target: 5'- aCGGacuGAGCCCCGaCGAGgCGCGCAu -3' miRNA: 3'- -GCCgccCUUGGGGCgGUUCaGCGUGU- -5' |
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18750 | 5' | -60.3 | NC_004683.1 | + | 32457 | 0.66 | 0.474635 |
Target: 5'- -uGUGGGcACCCCGCgGAGaUGCAUc -3' miRNA: 3'- gcCGCCCuUGGGGCGgUUCaGCGUGu -5' |
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18750 | 5' | -60.3 | NC_004683.1 | + | 35791 | 0.66 | 0.481478 |
Target: 5'- aGGUGGucaaaccguuaucgGggUCCCGCCAGGcUCagGCGCGu -3' miRNA: 3'- gCCGCC--------------CuuGGGGCGGUUC-AG--CGUGU- -5' |
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18750 | 5' | -60.3 | NC_004683.1 | + | 14564 | 0.66 | 0.484426 |
Target: 5'- gCGGUGGGuucaucuACgCCGaCGGGUCGCAg- -3' miRNA: 3'- -GCCGCCCu------UGgGGCgGUUCAGCGUgu -5' |
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18750 | 5' | -60.3 | NC_004683.1 | + | 48228 | 0.66 | 0.493319 |
Target: 5'- gCGGCGGGAacaaaucgcGCCgaaaugagcgacgCCGCCGgcgAGUggcUGCGCAg -3' miRNA: 3'- -GCCGCCCU---------UGG-------------GGCGGU---UCA---GCGUGU- -5' |
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18750 | 5' | -60.3 | NC_004683.1 | + | 51547 | 0.67 | 0.409103 |
Target: 5'- aCGGCaGGcGCgCCGCCAg--CGCACGc -3' miRNA: 3'- -GCCGcCCuUGgGGCGGUucaGCGUGU- -5' |
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18750 | 5' | -60.3 | NC_004683.1 | + | 50932 | 0.67 | 0.405531 |
Target: 5'- uGGgGGGAGaCCCGCaaaaccuucccGUCGCGCAc -3' miRNA: 3'- gCCgCCCUUgGGGCGguu--------CAGCGUGU- -5' |
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18750 | 5' | -60.3 | NC_004683.1 | + | 12236 | 0.67 | 0.400209 |
Target: 5'- gGGCGGGAGCgCCCggcgugccgauGCCcGG-CGCugGu -3' miRNA: 3'- gCCGCCCUUG-GGG-----------CGGuUCaGCGugU- -5' |
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18750 | 5' | -60.3 | NC_004683.1 | + | 19089 | 0.72 | 0.193778 |
Target: 5'- aCGGCGcgccuGGAucuACCCCGCUggGaugCGCGCGg -3' miRNA: 3'- -GCCGC-----CCU---UGGGGCGGuuCa--GCGUGU- -5' |
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18750 | 5' | -60.3 | NC_004683.1 | + | 25660 | 0.72 | 0.198837 |
Target: 5'- uGGCGGuccugcccaAACCCCG-CAAGUCGCGCc -3' miRNA: 3'- gCCGCCc--------UUGGGGCgGUUCAGCGUGu -5' |
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18750 | 5' | -60.3 | NC_004683.1 | + | 44785 | 0.72 | 0.209302 |
Target: 5'- gCGGCGGGccgcGugCCCGCgaucgcguuCAAGUUGCGCc -3' miRNA: 3'- -GCCGCCC----UugGGGCG---------GUUCAGCGUGu -5' |
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18750 | 5' | -60.3 | NC_004683.1 | + | 5756 | 0.7 | 0.249719 |
Target: 5'- -cGCGGGcACCgCCGCCGAGaUCGCucCAg -3' miRNA: 3'- gcCGCCCuUGG-GGCGGUUC-AGCGu-GU- -5' |
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18750 | 5' | -60.3 | NC_004683.1 | + | 20204 | 0.69 | 0.28931 |
Target: 5'- cCGGCGGGGucACCUCGUUcGGaUCGCugGc -3' miRNA: 3'- -GCCGCCCU--UGGGGCGGuUC-AGCGugU- -5' |
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18750 | 5' | -60.3 | NC_004683.1 | + | 24427 | 0.68 | 0.357638 |
Target: 5'- aCGGCGGGAccaaGCCgCCGgccaCCGAG-CGcCGCAa -3' miRNA: 3'- -GCCGCCCU----UGG-GGC----GGUUCaGC-GUGU- -5' |
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18750 | 5' | -60.3 | NC_004683.1 | + | 46057 | 0.67 | 0.391439 |
Target: 5'- -uGUGGGAcguGCCCCgguucGCCGAGgCGCACc -3' miRNA: 3'- gcCGCCCU---UGGGG-----CGGUUCaGCGUGu -5' |
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18750 | 5' | -60.3 | NC_004683.1 | + | 9725 | 0.67 | 0.400209 |
Target: 5'- aGGauGGGACCCUGCCcGAGgUGUACGc -3' miRNA: 3'- gCCgcCCUUGGGGCGG-UUCaGCGUGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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