miRNA display CGI


Results 21 - 37 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18750 5' -60.3 NC_004683.1 + 12236 0.67 0.400209
Target:  5'- gGGCGGGAGCgCCCggcgugccgauGCCcGG-CGCugGu -3'
miRNA:   3'- gCCGCCCUUG-GGG-----------CGGuUCaGCGugU- -5'
18750 5' -60.3 NC_004683.1 + 52525 0.68 0.37428
Target:  5'- gCGGCacGGGAGCaCCGCgCGucUCGCACAg -3'
miRNA:   3'- -GCCG--CCCUUGgGGCG-GUucAGCGUGU- -5'
18750 5' -60.3 NC_004683.1 + 44358 0.67 0.400209
Target:  5'- uCGGCGcGGAucGCCgCGUCGAGcCGCGu- -3'
miRNA:   3'- -GCCGC-CCU--UGGgGCGGUUCaGCGUgu -5'
18750 5' -60.3 NC_004683.1 + 1423 0.67 0.400209
Target:  5'- uCGGCGGGA---UCGagCGAGUCGCGCu -3'
miRNA:   3'- -GCCGCCCUuggGGCg-GUUCAGCGUGu -5'
18750 5' -60.3 NC_004683.1 + 44861 0.67 0.409103
Target:  5'- -cGCGGGcacgcggcccGCCgCCGCCGGGUCGUAg- -3'
miRNA:   3'- gcCGCCCu---------UGG-GGCGGUUCAGCGUgu -5'
18750 5' -60.3 NC_004683.1 + 9838 0.67 0.41812
Target:  5'- cCGGgGGcGAAUCCCGCUuuGAGgaacuuggCGUACAc -3'
miRNA:   3'- -GCCgCC-CUUGGGGCGG--UUCa-------GCGUGU- -5'
18750 5' -60.3 NC_004683.1 + 5829 0.66 0.455357
Target:  5'- uCGGCGGcGGugCCCGC-GAG-CGCGg- -3'
miRNA:   3'- -GCCGCC-CUugGGGCGgUUCaGCGUgu -5'
18750 5' -60.3 NC_004683.1 + 45527 0.68 0.341521
Target:  5'- gCGGCGGugcGGACCUCGC-GAGUCuuGCGCGc -3'
miRNA:   3'- -GCCGCC---CUUGGGGCGgUUCAG--CGUGU- -5'
18750 5' -60.3 NC_004683.1 + 24073 0.69 0.325935
Target:  5'- gGGCGGGcgguggcgugguGAUCgCGCCGAGggGCACGu -3'
miRNA:   3'- gCCGCCC------------UUGGgGCGGUUCagCGUGU- -5'
18750 5' -60.3 NC_004683.1 + 13832 0.69 0.323644
Target:  5'- uCGGCGGGGccuguuGCCCgGCgguguuuggcagcgCAGGcCGCGCAc -3'
miRNA:   3'- -GCCGCCCU------UGGGgCG--------------GUUCaGCGUGU- -5'
18750 5' -60.3 NC_004683.1 + 53983 0.7 0.255993
Target:  5'- gGGCGGGA---UCGCCGAGUUGCGa- -3'
miRNA:   3'- gCCGCCCUuggGGCGGUUCAGCGUgu -5'
18750 5' -60.3 NC_004683.1 + 46109 0.72 0.204011
Target:  5'- uGGCGcGGGACCgcucggCCGCCGcGUCGgGCAg -3'
miRNA:   3'- gCCGC-CCUUGG------GGCGGUuCAGCgUGU- -5'
18750 5' -60.3 NC_004683.1 + 31650 0.75 0.127027
Target:  5'- gGGCGGGGAgUuuGCCGAGUCGUc-- -3'
miRNA:   3'- gCCGCCCUUgGggCGGUUCAGCGugu -5'
18750 5' -60.3 NC_004683.1 + 12034 0.77 0.089184
Target:  5'- gCGGCGGuAGCCCCGCgCGGG-CGCGCu -3'
miRNA:   3'- -GCCGCCcUUGGGGCG-GUUCaGCGUGu -5'
18750 5' -60.3 NC_004683.1 + 12112 0.77 0.086765
Target:  5'- cCGGCGGuAGCCCCGCgCGGG-CGCGCu -3'
miRNA:   3'- -GCCGCCcUUGGGGCG-GUUCaGCGUGu -5'
18750 5' -60.3 NC_004683.1 + 658 1.08 0.000403
Target:  5'- cCGGCGGGAACCCCGCCAAGUCGCACAg -3'
miRNA:   3'- -GCCGCCCUUGGGGCGGUUCAGCGUGU- -5'
18750 5' -60.3 NC_004683.1 + 55222 0.66 0.455357
Target:  5'- cCGaGCGGGuGACCUCGCCAuGcUCGUcCAu -3'
miRNA:   3'- -GC-CGCCC-UUGGGGCGGUuC-AGCGuGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.