Results 21 - 37 of 37 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18750 | 5' | -60.3 | NC_004683.1 | + | 25660 | 0.72 | 0.198837 |
Target: 5'- uGGCGGuccugcccaAACCCCG-CAAGUCGCGCc -3' miRNA: 3'- gCCGCCc--------UUGGGGCgGUUCAGCGUGu -5' |
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18750 | 5' | -60.3 | NC_004683.1 | + | 31650 | 0.75 | 0.127027 |
Target: 5'- gGGCGGGGAgUuuGCCGAGUCGUc-- -3' miRNA: 3'- gCCGCCCUUgGggCGGUUCAGCGugu -5' |
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18750 | 5' | -60.3 | NC_004683.1 | + | 32457 | 0.66 | 0.474635 |
Target: 5'- -uGUGGGcACCCCGCgGAGaUGCAUc -3' miRNA: 3'- gcCGCCCuUGGGGCGgUUCaGCGUGu -5' |
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18750 | 5' | -60.3 | NC_004683.1 | + | 35791 | 0.66 | 0.481478 |
Target: 5'- aGGUGGucaaaccguuaucgGggUCCCGCCAGGcUCagGCGCGu -3' miRNA: 3'- gCCGCC--------------CuuGGGGCGGUUC-AG--CGUGU- -5' |
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18750 | 5' | -60.3 | NC_004683.1 | + | 44358 | 0.67 | 0.400209 |
Target: 5'- uCGGCGcGGAucGCCgCGUCGAGcCGCGu- -3' miRNA: 3'- -GCCGC-CCU--UGGgGCGGUUCaGCGUgu -5' |
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18750 | 5' | -60.3 | NC_004683.1 | + | 44785 | 0.72 | 0.209302 |
Target: 5'- gCGGCGGGccgcGugCCCGCgaucgcguuCAAGUUGCGCc -3' miRNA: 3'- -GCCGCCC----UugGGGCG---------GUUCAGCGUGu -5' |
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18750 | 5' | -60.3 | NC_004683.1 | + | 44861 | 0.67 | 0.409103 |
Target: 5'- -cGCGGGcacgcggcccGCCgCCGCCGGGUCGUAg- -3' miRNA: 3'- gcCGCCCu---------UGG-GGCGGUUCAGCGUgu -5' |
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18750 | 5' | -60.3 | NC_004683.1 | + | 45527 | 0.68 | 0.341521 |
Target: 5'- gCGGCGGugcGGACCUCGC-GAGUCuuGCGCGc -3' miRNA: 3'- -GCCGCC---CUUGGGGCGgUUCAG--CGUGU- -5' |
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18750 | 5' | -60.3 | NC_004683.1 | + | 46057 | 0.67 | 0.391439 |
Target: 5'- -uGUGGGAcguGCCCCgguucGCCGAGgCGCACc -3' miRNA: 3'- gcCGCCCU---UGGGG-----CGGUUCaGCGUGu -5' |
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18750 | 5' | -60.3 | NC_004683.1 | + | 46109 | 0.72 | 0.204011 |
Target: 5'- uGGCGcGGGACCgcucggCCGCCGcGUCGgGCAg -3' miRNA: 3'- gCCGC-CCUUGG------GGCGGUuCAGCgUGU- -5' |
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18750 | 5' | -60.3 | NC_004683.1 | + | 48228 | 0.66 | 0.493319 |
Target: 5'- gCGGCGGGAacaaaucgcGCCgaaaugagcgacgCCGCCGgcgAGUggcUGCGCAg -3' miRNA: 3'- -GCCGCCCU---------UGG-------------GGCGGU---UCA---GCGUGU- -5' |
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18750 | 5' | -60.3 | NC_004683.1 | + | 50932 | 0.67 | 0.405531 |
Target: 5'- uGGgGGGAGaCCCGCaaaaccuucccGUCGCGCAc -3' miRNA: 3'- gCCgCCCUUgGGGCGguu--------CAGCGUGU- -5' |
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18750 | 5' | -60.3 | NC_004683.1 | + | 51547 | 0.67 | 0.409103 |
Target: 5'- aCGGCaGGcGCgCCGCCAg--CGCACGc -3' miRNA: 3'- -GCCGcCCuUGgGGCGGUucaGCGUGU- -5' |
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18750 | 5' | -60.3 | NC_004683.1 | + | 52525 | 0.68 | 0.37428 |
Target: 5'- gCGGCacGGGAGCaCCGCgCGucUCGCACAg -3' miRNA: 3'- -GCCG--CCCUUGgGGCG-GUucAGCGUGU- -5' |
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18750 | 5' | -60.3 | NC_004683.1 | + | 53983 | 0.7 | 0.255993 |
Target: 5'- gGGCGGGA---UCGCCGAGUUGCGa- -3' miRNA: 3'- gCCGCCCUuggGGCGGUUCAGCGUgu -5' |
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18750 | 5' | -60.3 | NC_004683.1 | + | 55222 | 0.66 | 0.455357 |
Target: 5'- cCGaGCGGGuGACCUCGCCAuGcUCGUcCAu -3' miRNA: 3'- -GC-CGCCC-UUGGGGCGGUuC-AGCGuGU- -5' |
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18750 | 5' | -60.3 | NC_004683.1 | + | 56711 | 0.66 | 0.474635 |
Target: 5'- aCGGacuGAGCCCCGaCGAGgCGCGCAu -3' miRNA: 3'- -GCCgccCUUGGGGCgGUUCaGCGUGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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