Results 41 - 50 of 50 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
18753 | 3' | -59.6 | NC_004683.1 | + | 4522 | 0.66 | 0.515371 |
Target: 5'- -gCGCGucGUCGGACUCGGcCGGGuguUCa- -3' miRNA: 3'- gaGCGC--CGGCUUGAGCC-GCCCu--AGcu -5' |
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18753 | 3' | -59.6 | NC_004683.1 | + | 52489 | 0.66 | 0.525482 |
Target: 5'- uCUCGCGcGCUG-GCUCGGCaagcacgugcaGGcGAUCGc -3' miRNA: 3'- -GAGCGC-CGGCuUGAGCCG-----------CC-CUAGCu -5' |
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18753 | 3' | -59.6 | NC_004683.1 | + | 3017 | 0.66 | 0.535666 |
Target: 5'- cCUgGuCGGCaCGAAuCUCGcGCaGGAUCGGc -3' miRNA: 3'- -GAgC-GCCG-GCUU-GAGC-CGcCCUAGCU- -5' |
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18753 | 3' | -59.6 | NC_004683.1 | + | 7574 | 0.66 | 0.535666 |
Target: 5'- uUCGCaacucGGCCGAGgUCGacGCGGGcAUCa- -3' miRNA: 3'- gAGCG-----CCGGCUUgAGC--CGCCC-UAGcu -5' |
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18753 | 3' | -59.6 | NC_004683.1 | + | 40320 | 0.66 | 0.545919 |
Target: 5'- -aCGCGcGCCuGcAGCUCGGCGcGGGccugcUCGGc -3' miRNA: 3'- gaGCGC-CGG-C-UUGAGCCGC-CCU-----AGCU- -5' |
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18753 | 3' | -59.6 | NC_004683.1 | + | 33253 | 0.66 | 0.545919 |
Target: 5'- --gGUGGUgauCGAacaGCUCGGCGaGAUCGAa -3' miRNA: 3'- gagCGCCG---GCU---UGAGCCGCcCUAGCU- -5' |
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18753 | 3' | -59.6 | NC_004683.1 | + | 56282 | 0.66 | 0.545919 |
Target: 5'- aCUgGCGGCCGAgguagaagcugACgaugCgGGUGGGcgCGGu -3' miRNA: 3'- -GAgCGCCGGCU-----------UGa---G-CCGCCCuaGCU- -5' |
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18753 | 3' | -59.6 | NC_004683.1 | + | 56571 | 0.66 | 0.545919 |
Target: 5'- -gUGCGGCCGGGCaugCGuCGGGAccugCGGu -3' miRNA: 3'- gaGCGCCGGCUUGa--GCcGCCCUa---GCU- -5' |
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18753 | 3' | -59.6 | NC_004683.1 | + | 28274 | 0.66 | 0.545919 |
Target: 5'- cCUCGCGGCCGucggcuccGugUUGGCuGGcGUCa- -3' miRNA: 3'- -GAGCGCCGGC--------UugAGCCGcCC-UAGcu -5' |
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18753 | 3' | -59.6 | NC_004683.1 | + | 14291 | 0.66 | 0.550038 |
Target: 5'- gUCGCGGCCacgcaccagcaguuuGAucucaacCUCGGUGGGGcccugcagcgcgUCGAc -3' miRNA: 3'- gAGCGCCGG---------------CUu------GAGCCGCCCU------------AGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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