miRNA display CGI


Results 21 - 40 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18753 3' -59.6 NC_004683.1 + 26511 0.69 0.36728
Target:  5'- -cUGCGGCC-AACUCGGCGGcaccggCGGg -3'
miRNA:   3'- gaGCGCCGGcUUGAGCCGCCcua---GCU- -5'
18753 3' -59.6 NC_004683.1 + 26559 0.72 0.216118
Target:  5'- cCUCGuCGGCguauCGGGCUCGGCGGGcggccuggAUCGc -3'
miRNA:   3'- -GAGC-GCCG----GCUUGAGCCGCCC--------UAGCu -5'
18753 3' -59.6 NC_004683.1 + 27313 0.68 0.419408
Target:  5'- -cCGCaGGaUCGAaucGCUCGGCGGcAUCGAg -3'
miRNA:   3'- gaGCG-CC-GGCU---UGAGCCGCCcUAGCU- -5'
18753 3' -59.6 NC_004683.1 + 27757 0.68 0.401535
Target:  5'- --aGUGGCCGAGCUCG-UGGGcgCa- -3'
miRNA:   3'- gagCGCCGGCUUGAGCcGCCCuaGcu -5'
18753 3' -59.6 NC_004683.1 + 28274 0.66 0.545919
Target:  5'- cCUCGCGGCCGucggcuccGugUUGGCuGGcGUCa- -3'
miRNA:   3'- -GAGCGCCGGC--------UugAGCCGcCC-UAGcu -5'
18753 3' -59.6 NC_004683.1 + 28631 0.71 0.277044
Target:  5'- uUgGCGGCCGAcggccgagACUUGGCGGcGcUCGGc -3'
miRNA:   3'- gAgCGCCGGCU--------UGAGCCGCC-CuAGCU- -5'
18753 3' -59.6 NC_004683.1 + 29344 0.66 0.50534
Target:  5'- gUCGgGGUcuCGGAUUgGGCGGuGUCGAa -3'
miRNA:   3'- gAGCgCCG--GCUUGAgCCGCCcUAGCU- -5'
18753 3' -59.6 NC_004683.1 + 33253 0.66 0.545919
Target:  5'- --gGUGGUgauCGAacaGCUCGGCGaGAUCGAa -3'
miRNA:   3'- gagCGCCG---GCU---UGAGCCGCcCUAGCU- -5'
18753 3' -59.6 NC_004683.1 + 33278 0.66 0.515371
Target:  5'- uUCGCGGaCGGugcGCUgGGUGGGAUg-- -3'
miRNA:   3'- gAGCGCCgGCU---UGAgCCGCCCUAgcu -5'
18753 3' -59.6 NC_004683.1 + 33350 0.67 0.456553
Target:  5'- gUCGCgGGCCucuuuCUCGGUGGGGUa-- -3'
miRNA:   3'- gAGCG-CCGGcuu--GAGCCGCCCUAgcu -5'
18753 3' -59.6 NC_004683.1 + 33934 0.71 0.277044
Target:  5'- uUCGCgGGCCGcg-UCGGCuGGAUCGGc -3'
miRNA:   3'- gAGCG-CCGGCuugAGCCGcCCUAGCU- -5'
18753 3' -59.6 NC_004683.1 + 40320 0.66 0.545919
Target:  5'- -aCGCGcGCCuGcAGCUCGGCGcGGGccugcUCGGc -3'
miRNA:   3'- gaGCGC-CGG-C-UUGAGCCGC-CCU-----AGCU- -5'
18753 3' -59.6 NC_004683.1 + 40479 0.66 0.50534
Target:  5'- -gCGCGGCagguCGAGCUCGuCGaGGUCGAg -3'
miRNA:   3'- gaGCGCCG----GCUUGAGCcGCcCUAGCU- -5'
18753 3' -59.6 NC_004683.1 + 41007 0.74 0.175979
Target:  5'- -gCGCGGUC-AGCUCGGCGcccGGGUCGGa -3'
miRNA:   3'- gaGCGCCGGcUUGAGCCGC---CCUAGCU- -5'
18753 3' -59.6 NC_004683.1 + 41281 0.66 0.494405
Target:  5'- cCUCgGCGGCCuucgccGCgUCGGCGGGuguccauAUCGGa -3'
miRNA:   3'- -GAG-CGCCGGcu----UG-AGCCGCCC-------UAGCU- -5'
18753 3' -59.6 NC_004683.1 + 44637 0.69 0.375653
Target:  5'- -aCGcCGGCCGAA-UCGGCGaGGAacUUGAa -3'
miRNA:   3'- gaGC-GCCGGCUUgAGCCGC-CCU--AGCU- -5'
18753 3' -59.6 NC_004683.1 + 47377 0.67 0.475776
Target:  5'- aUCGCGGgCuGGCUCGGCaGcgugaGAUCGAa -3'
miRNA:   3'- gAGCGCCgGcUUGAGCCGcC-----CUAGCU- -5'
18753 3' -59.6 NC_004683.1 + 49091 0.74 0.180609
Target:  5'- uUCcCGGUCGGGCUugagggCGGCGGGAUCGc -3'
miRNA:   3'- gAGcGCCGGCUUGA------GCCGCCCUAGCu -5'
18753 3' -59.6 NC_004683.1 + 51600 0.68 0.410411
Target:  5'- gUCGCcaGGCCGAGCUCGaCGcGAUCa- -3'
miRNA:   3'- gAGCG--CCGGCUUGAGCcGCcCUAGcu -5'
18753 3' -59.6 NC_004683.1 + 51680 0.69 0.375653
Target:  5'- aUCGC-GUCGAGCUCGGCcuGGcgacGGUCGAg -3'
miRNA:   3'- gAGCGcCGGCUUGAGCCG--CC----CUAGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.