miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18753 3' -59.6 NC_004683.1 + 301 0.67 0.456553
Target:  5'- aUCGCGGC---GCUCGGaguGGGAUCc- -3'
miRNA:   3'- gAGCGCCGgcuUGAGCCg--CCCUAGcu -5'
18753 3' -59.6 NC_004683.1 + 565 0.72 0.245013
Target:  5'- --gGUGGCCGAccugugcgACUUGGCGGGGUUc- -3'
miRNA:   3'- gagCGCCGGCU--------UGAGCCGCCCUAGcu -5'
18753 3' -59.6 NC_004683.1 + 1437 1.08 0.000525
Target:  5'- gCUCGCGGCCGAACUCGGCGGGAUCGAg -3'
miRNA:   3'- -GAGCGCCGGCUUGAGCCGCCCUAGCU- -5'
18753 3' -59.6 NC_004683.1 + 2759 0.73 0.210701
Target:  5'- -cCGCGG-CGAGCUCGGCGGcGGccaacUCGGu -3'
miRNA:   3'- gaGCGCCgGCUUGAGCCGCC-CU-----AGCU- -5'
18753 3' -59.6 NC_004683.1 + 3017 0.66 0.535666
Target:  5'- cCUgGuCGGCaCGAAuCUCGcGCaGGAUCGGc -3'
miRNA:   3'- -GAgC-GCCG-GCUU-GAGC-CGcCCUAGCU- -5'
18753 3' -59.6 NC_004683.1 + 3107 0.67 0.485538
Target:  5'- -cCGCGGCCGGG-UCGGCcaucGGGUUGu -3'
miRNA:   3'- gaGCGCCGGCUUgAGCCGc---CCUAGCu -5'
18753 3' -59.6 NC_004683.1 + 4036 0.68 0.428523
Target:  5'- -gUGCGcGCCGccCUCGGgugcgagcaCGGGGUCGAc -3'
miRNA:   3'- gaGCGC-CGGCuuGAGCC---------GCCCUAGCU- -5'
18753 3' -59.6 NC_004683.1 + 4522 0.66 0.515371
Target:  5'- -gCGCGucGUCGGACUCGGcCGGGuguUCa- -3'
miRNA:   3'- gaGCGC--CGGCUUGAGCC-GCCCu--AGcu -5'
18753 3' -59.6 NC_004683.1 + 6942 0.69 0.373127
Target:  5'- --gGCGGCCGAcuggCGGCGGGcgguggugcagcucGUCGGc -3'
miRNA:   3'- gagCGCCGGCUuga-GCCGCCC--------------UAGCU- -5'
18753 3' -59.6 NC_004683.1 + 7574 0.66 0.535666
Target:  5'- uUCGCaacucGGCCGAGgUCGacGCGGGcAUCa- -3'
miRNA:   3'- gAGCG-----CCGGCUUgAGC--CGCCC-UAGcu -5'
18753 3' -59.6 NC_004683.1 + 10124 0.77 0.115125
Target:  5'- -cCGCGGCCGAacgGCUCGGCGGcg-UGAg -3'
miRNA:   3'- gaGCGCCGGCU---UGAGCCGCCcuaGCU- -5'
18753 3' -59.6 NC_004683.1 + 10753 0.68 0.418503
Target:  5'- -aCGCGG-CGAACgaguucgUCGGCGGGuUCGc -3'
miRNA:   3'- gaGCGCCgGCUUG-------AGCCGCCCuAGCu -5'
18753 3' -59.6 NC_004683.1 + 10980 0.69 0.342148
Target:  5'- -aCGCGGCCGGACaggcuuacgccaaUgGGUGGGGccagucgcUCGAg -3'
miRNA:   3'- gaGCGCCGGCUUG-------------AgCCGCCCU--------AGCU- -5'
18753 3' -59.6 NC_004683.1 + 13111 0.68 0.410411
Target:  5'- -aCGCGGCgGcugcccggaggGGCaUCGGCGGGAcCGGu -3'
miRNA:   3'- gaGCGCCGgC-----------UUG-AGCCGCCCUaGCU- -5'
18753 3' -59.6 NC_004683.1 + 14291 0.66 0.550038
Target:  5'- gUCGCGGCCacgcaccagcaguuuGAucucaacCUCGGUGGGGcccugcagcgcgUCGAc -3'
miRNA:   3'- gAGCGCCGG---------------CUu------GAGCCGCCCU------------AGCU- -5'
18753 3' -59.6 NC_004683.1 + 20180 0.74 0.171456
Target:  5'- -cCGCGGCCucaacaccagGAACgacCGGCGGGGUCa- -3'
miRNA:   3'- gaGCGCCGG----------CUUGa--GCCGCCCUAGcu -5'
18753 3' -59.6 NC_004683.1 + 23252 0.68 0.418503
Target:  5'- aCUgGUGGCgGggUcgguggaUCGGUGGGGUCa- -3'
miRNA:   3'- -GAgCGCCGgCuuG-------AGCCGCCCUAGcu -5'
18753 3' -59.6 NC_004683.1 + 23777 0.71 0.277044
Target:  5'- -cCGCGGCgGAACgucgagaacccgUCGGCGcGGAUCu- -3'
miRNA:   3'- gaGCGCCGgCUUG------------AGCCGC-CCUAGcu -5'
18753 3' -59.6 NC_004683.1 + 24344 0.71 0.257441
Target:  5'- -gCGCGGCguaGGACUCGGCGuaGGcgCGGg -3'
miRNA:   3'- gaGCGCCGg--CUUGAGCCGC--CCuaGCU- -5'
18753 3' -59.6 NC_004683.1 + 24401 0.7 0.305008
Target:  5'- uCUCGCGGgUGAACUCGGCG---UCGc -3'
miRNA:   3'- -GAGCGCCgGCUUGAGCCGCccuAGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.