miRNA display CGI


Results 1 - 20 of 50 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18753 3' -59.6 NC_004683.1 + 20180 0.74 0.171456
Target:  5'- -cCGCGGCCucaacaccagGAACgacCGGCGGGGUCa- -3'
miRNA:   3'- gaGCGCCGG----------CUUGa--GCCGCCCUAGcu -5'
18753 3' -59.6 NC_004683.1 + 28274 0.66 0.545919
Target:  5'- cCUCGCGGCCGucggcuccGugUUGGCuGGcGUCa- -3'
miRNA:   3'- -GAGCGCCGGC--------UugAGCCGcCC-UAGcu -5'
18753 3' -59.6 NC_004683.1 + 7574 0.66 0.535666
Target:  5'- uUCGCaacucGGCCGAGgUCGacGCGGGcAUCa- -3'
miRNA:   3'- gAGCG-----CCGGCUUgAGC--CGCCC-UAGcu -5'
18753 3' -59.6 NC_004683.1 + 52489 0.66 0.525482
Target:  5'- uCUCGCGcGCUG-GCUCGGCaagcacgugcaGGcGAUCGc -3'
miRNA:   3'- -GAGCGC-CGGCuUGAGCCG-----------CC-CUAGCu -5'
18753 3' -59.6 NC_004683.1 + 33278 0.66 0.515371
Target:  5'- uUCGCGGaCGGugcGCUgGGUGGGAUg-- -3'
miRNA:   3'- gAGCGCCgGCU---UGAgCCGCCCUAgcu -5'
18753 3' -59.6 NC_004683.1 + 33350 0.67 0.456553
Target:  5'- gUCGCgGGCCucuuuCUCGGUGGGGUa-- -3'
miRNA:   3'- gAGCG-CCGGcuu--GAGCCGCCCUAgcu -5'
18753 3' -59.6 NC_004683.1 + 10753 0.68 0.418503
Target:  5'- -aCGCGG-CGAACgaguucgUCGGCGGGuUCGc -3'
miRNA:   3'- gaGCGCCgGCUUG-------AGCCGCCCuAGCu -5'
18753 3' -59.6 NC_004683.1 + 51600 0.68 0.410411
Target:  5'- gUCGCcaGGCCGAGCUCGaCGcGAUCa- -3'
miRNA:   3'- gAGCG--CCGGCUUGAGCcGCcCUAGcu -5'
18753 3' -59.6 NC_004683.1 + 13111 0.68 0.410411
Target:  5'- -aCGCGGCgGcugcccggaggGGCaUCGGCGGGAcCGGu -3'
miRNA:   3'- gaGCGCCGgC-----------UUG-AGCCGCCCUaGCU- -5'
18753 3' -59.6 NC_004683.1 + 6942 0.69 0.373127
Target:  5'- --gGCGGCCGAcuggCGGCGGGcgguggugcagcucGUCGGc -3'
miRNA:   3'- gagCGCCGGCUuga-GCCGCCC--------------UAGCU- -5'
18753 3' -59.6 NC_004683.1 + 2759 0.73 0.210701
Target:  5'- -cCGCGG-CGAGCUCGGCGGcGGccaacUCGGu -3'
miRNA:   3'- gaGCGCCgGCUUGAGCCGCC-CU-----AGCU- -5'
18753 3' -59.6 NC_004683.1 + 565 0.72 0.245013
Target:  5'- --gGUGGCCGAccugugcgACUUGGCGGGGUUc- -3'
miRNA:   3'- gagCGCCGGCU--------UGAGCCGCCCUAGcu -5'
18753 3' -59.6 NC_004683.1 + 53611 0.72 0.245013
Target:  5'- uUCGCcGCCGAGCUgCGGCGcGAUCa- -3'
miRNA:   3'- gAGCGcCGGCUUGA-GCCGCcCUAGcu -5'
18753 3' -59.6 NC_004683.1 + 28631 0.71 0.277044
Target:  5'- uUgGCGGCCGAcggccgagACUUGGCGGcGcUCGGc -3'
miRNA:   3'- gAgCGCCGGCU--------UGAGCCGCC-CuAGCU- -5'
18753 3' -59.6 NC_004683.1 + 33934 0.71 0.277044
Target:  5'- uUCGCgGGCCGcg-UCGGCuGGAUCGGc -3'
miRNA:   3'- gAGCG-CCGGCuugAGCCGcCCUAGCU- -5'
18753 3' -59.6 NC_004683.1 + 10980 0.69 0.342148
Target:  5'- -aCGCGGCCGGACaggcuuacgccaaUgGGUGGGGccagucgcUCGAg -3'
miRNA:   3'- gaGCGCCGGCUUG-------------AgCCGCCCU--------AGCU- -5'
18753 3' -59.6 NC_004683.1 + 14291 0.66 0.550038
Target:  5'- gUCGCGGCCacgcaccagcaguuuGAucucaacCUCGGUGGGGcccugcagcgcgUCGAc -3'
miRNA:   3'- gAGCGCCGG---------------CUu------GAGCCGCCCU------------AGCU- -5'
18753 3' -59.6 NC_004683.1 + 10124 0.77 0.115125
Target:  5'- -cCGCGGCCGAacgGCUCGGCGGcg-UGAg -3'
miRNA:   3'- gaGCGCCGGCU---UGAGCCGCCcuaGCU- -5'
18753 3' -59.6 NC_004683.1 + 41007 0.74 0.175979
Target:  5'- -gCGCGGUC-AGCUCGGCGcccGGGUCGGa -3'
miRNA:   3'- gaGCGCCGGcUUGAGCCGC---CCUAGCU- -5'
18753 3' -59.6 NC_004683.1 + 49091 0.74 0.180609
Target:  5'- uUCcCGGUCGGGCUugagggCGGCGGGAUCGc -3'
miRNA:   3'- gAGcGCCGGCUUGA------GCCGCCCUAGCu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.