miRNA display CGI


Results 1 - 20 of 50 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18753 3' -59.6 NC_004683.1 + 1437 1.08 0.000525
Target:  5'- gCUCGCGGCCGAACUCGGCGGGAUCGAg -3'
miRNA:   3'- -GAGCGCCGGCUUGAGCCGCCCUAGCU- -5'
18753 3' -59.6 NC_004683.1 + 10124 0.77 0.115125
Target:  5'- -cCGCGGCCGAacgGCUCGGCGGcg-UGAg -3'
miRNA:   3'- gaGCGCCGGCU---UGAGCCGCCcuaGCU- -5'
18753 3' -59.6 NC_004683.1 + 20180 0.74 0.171456
Target:  5'- -cCGCGGCCucaacaccagGAACgacCGGCGGGGUCa- -3'
miRNA:   3'- gaGCGCCGG----------CUUGa--GCCGCCCUAGcu -5'
18753 3' -59.6 NC_004683.1 + 41007 0.74 0.175979
Target:  5'- -gCGCGGUC-AGCUCGGCGcccGGGUCGGa -3'
miRNA:   3'- gaGCGCCGGcUUGAGCCGC---CCUAGCU- -5'
18753 3' -59.6 NC_004683.1 + 49091 0.74 0.180609
Target:  5'- uUCcCGGUCGGGCUugagggCGGCGGGAUCGc -3'
miRNA:   3'- gAGcGCCGGCUUGA------GCCGCCCUAGCu -5'
18753 3' -59.6 NC_004683.1 + 2759 0.73 0.210701
Target:  5'- -cCGCGG-CGAGCUCGGCGGcGGccaacUCGGu -3'
miRNA:   3'- gaGCGCCgGCUUGAGCCGCC-CU-----AGCU- -5'
18753 3' -59.6 NC_004683.1 + 26559 0.72 0.216118
Target:  5'- cCUCGuCGGCguauCGGGCUCGGCGGGcggccuggAUCGc -3'
miRNA:   3'- -GAGC-GCCG----GCUUGAGCCGCCC--------UAGCu -5'
18753 3' -59.6 NC_004683.1 + 565 0.72 0.245013
Target:  5'- --gGUGGCCGAccugugcgACUUGGCGGGGUUc- -3'
miRNA:   3'- gagCGCCGGCU--------UGAGCCGCCCUAGcu -5'
18753 3' -59.6 NC_004683.1 + 53611 0.72 0.245013
Target:  5'- uUCGCcGCCGAGCUgCGGCGcGAUCa- -3'
miRNA:   3'- gAGCGcCGGCUUGA-GCCGCcCUAGcu -5'
18753 3' -59.6 NC_004683.1 + 24344 0.71 0.257441
Target:  5'- -gCGCGGCguaGGACUCGGCGuaGGcgCGGg -3'
miRNA:   3'- gaGCGCCGg--CUUGAGCCGC--CCuaGCU- -5'
18753 3' -59.6 NC_004683.1 + 23777 0.71 0.277044
Target:  5'- -cCGCGGCgGAACgucgagaacccgUCGGCGcGGAUCu- -3'
miRNA:   3'- gaGCGCCGgCUUG------------AGCCGC-CCUAGcu -5'
18753 3' -59.6 NC_004683.1 + 28631 0.71 0.277044
Target:  5'- uUgGCGGCCGAcggccgagACUUGGCGGcGcUCGGc -3'
miRNA:   3'- gAgCGCCGGCU--------UGAGCCGCC-CuAGCU- -5'
18753 3' -59.6 NC_004683.1 + 33934 0.71 0.277044
Target:  5'- uUCGCgGGCCGcg-UCGGCuGGAUCGGc -3'
miRNA:   3'- gAGCG-CCGGCuugAGCCGcCCUAGCU- -5'
18753 3' -59.6 NC_004683.1 + 56828 0.7 0.297819
Target:  5'- gUCGUGGCCGAgaucccaugGCUCGuCGGGcUUGAu -3'
miRNA:   3'- gAGCGCCGGCU---------UGAGCcGCCCuAGCU- -5'
18753 3' -59.6 NC_004683.1 + 24401 0.7 0.305008
Target:  5'- uCUCGCGGgUGAACUCGGCG---UCGc -3'
miRNA:   3'- -GAGCGCCgGCUUGAGCCGCccuAGCu -5'
18753 3' -59.6 NC_004683.1 + 54011 0.69 0.33431
Target:  5'- cCUCGuCGGCC-AugUCcuuugccaucucgGGCGGGAUCGc -3'
miRNA:   3'- -GAGC-GCCGGcUugAG-------------CCGCCCUAGCu -5'
18753 3' -59.6 NC_004683.1 + 10980 0.69 0.342148
Target:  5'- -aCGCGGCCGGACaggcuuacgccaaUgGGUGGGGccagucgcUCGAg -3'
miRNA:   3'- gaGCGCCGGCUUG-------------AgCCGCCCU--------AGCU- -5'
18753 3' -59.6 NC_004683.1 + 53690 0.69 0.350922
Target:  5'- aUCGC-GCCGcAGCUCGGCGGcGAagacgCGGc -3'
miRNA:   3'- gAGCGcCGGC-UUGAGCCGCC-CUa----GCU- -5'
18753 3' -59.6 NC_004683.1 + 26511 0.69 0.36728
Target:  5'- -cUGCGGCC-AACUCGGCGGcaccggCGGg -3'
miRNA:   3'- gaGCGCCGGcUUGAGCCGCCcua---GCU- -5'
18753 3' -59.6 NC_004683.1 + 6942 0.69 0.373127
Target:  5'- --gGCGGCCGAcuggCGGCGGGcgguggugcagcucGUCGGc -3'
miRNA:   3'- gagCGCCGGCUuga-GCCGCCC--------------UAGCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.