Results 1 - 20 of 50 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18753 | 3' | -59.6 | NC_004683.1 | + | 56828 | 0.7 | 0.297819 |
Target: 5'- gUCGUGGCCGAgaucccaugGCUCGuCGGGcUUGAu -3' miRNA: 3'- gAGCGCCGGCU---------UGAGCcGCCCuAGCU- -5' |
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18753 | 3' | -59.6 | NC_004683.1 | + | 56571 | 0.66 | 0.545919 |
Target: 5'- -gUGCGGCCGGGCaugCGuCGGGAccugCGGu -3' miRNA: 3'- gaGCGCCGGCUUGa--GCcGCCCUa---GCU- -5' |
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18753 | 3' | -59.6 | NC_004683.1 | + | 56282 | 0.66 | 0.545919 |
Target: 5'- aCUgGCGGCCGAgguagaagcugACgaugCgGGUGGGcgCGGu -3' miRNA: 3'- -GAgCGCCGGCU-----------UGa---G-CCGCCCuaGCU- -5' |
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18753 | 3' | -59.6 | NC_004683.1 | + | 54461 | 0.68 | 0.392782 |
Target: 5'- gUUGCGGCCGGGCaUGcGuuGGGUCGGg -3' miRNA: 3'- gAGCGCCGGCUUGaGC-CgcCCUAGCU- -5' |
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18753 | 3' | -59.6 | NC_004683.1 | + | 54236 | 0.66 | 0.511349 |
Target: 5'- -gCGCGGCCGuugaccuuuggccGCUCGGCGucGAuaUCGAu -3' miRNA: 3'- gaGCGCCGGCu------------UGAGCCGCc-CU--AGCU- -5' |
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18753 | 3' | -59.6 | NC_004683.1 | + | 54050 | 0.67 | 0.456553 |
Target: 5'- -cCGCGG-UGAGCUUGGCGacGUCGAa -3' miRNA: 3'- gaGCGCCgGCUUGAGCCGCccUAGCU- -5' |
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18753 | 3' | -59.6 | NC_004683.1 | + | 54011 | 0.69 | 0.33431 |
Target: 5'- cCUCGuCGGCC-AugUCcuuugccaucucgGGCGGGAUCGc -3' miRNA: 3'- -GAGC-GCCGGcUugAG-------------CCGCCCUAGCu -5' |
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18753 | 3' | -59.6 | NC_004683.1 | + | 53690 | 0.69 | 0.350922 |
Target: 5'- aUCGC-GCCGcAGCUCGGCGGcGAagacgCGGc -3' miRNA: 3'- gAGCGcCGGC-UUGAGCCGCC-CUa----GCU- -5' |
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18753 | 3' | -59.6 | NC_004683.1 | + | 53611 | 0.72 | 0.245013 |
Target: 5'- uUCGCcGCCGAGCUgCGGCGcGAUCa- -3' miRNA: 3'- gAGCGcCGGCUUGA-GCCGCcCUAGcu -5' |
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18753 | 3' | -59.6 | NC_004683.1 | + | 52489 | 0.66 | 0.525482 |
Target: 5'- uCUCGCGcGCUG-GCUCGGCaagcacgugcaGGcGAUCGc -3' miRNA: 3'- -GAGCGC-CGGCuUGAGCCG-----------CC-CUAGCu -5' |
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18753 | 3' | -59.6 | NC_004683.1 | + | 51680 | 0.69 | 0.375653 |
Target: 5'- aUCGC-GUCGAGCUCGGCcuGGcgacGGUCGAg -3' miRNA: 3'- gAGCGcCGGCUUGAGCCG--CC----CUAGCU- -5' |
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18753 | 3' | -59.6 | NC_004683.1 | + | 51600 | 0.68 | 0.410411 |
Target: 5'- gUCGCcaGGCCGAGCUCGaCGcGAUCa- -3' miRNA: 3'- gAGCG--CCGGCUUGAGCcGCcCUAGcu -5' |
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18753 | 3' | -59.6 | NC_004683.1 | + | 49091 | 0.74 | 0.180609 |
Target: 5'- uUCcCGGUCGGGCUugagggCGGCGGGAUCGc -3' miRNA: 3'- gAGcGCCGGCUUGA------GCCGCCCUAGCu -5' |
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18753 | 3' | -59.6 | NC_004683.1 | + | 47377 | 0.67 | 0.475776 |
Target: 5'- aUCGCGGgCuGGCUCGGCaGcgugaGAUCGAa -3' miRNA: 3'- gAGCGCCgGcUUGAGCCGcC-----CUAGCU- -5' |
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18753 | 3' | -59.6 | NC_004683.1 | + | 44637 | 0.69 | 0.375653 |
Target: 5'- -aCGcCGGCCGAA-UCGGCGaGGAacUUGAa -3' miRNA: 3'- gaGC-GCCGGCUUgAGCCGC-CCU--AGCU- -5' |
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18753 | 3' | -59.6 | NC_004683.1 | + | 41281 | 0.66 | 0.494405 |
Target: 5'- cCUCgGCGGCCuucgccGCgUCGGCGGGuguccauAUCGGa -3' miRNA: 3'- -GAG-CGCCGGcu----UG-AGCCGCCC-------UAGCU- -5' |
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18753 | 3' | -59.6 | NC_004683.1 | + | 41007 | 0.74 | 0.175979 |
Target: 5'- -gCGCGGUC-AGCUCGGCGcccGGGUCGGa -3' miRNA: 3'- gaGCGCCGGcUUGAGCCGC---CCUAGCU- -5' |
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18753 | 3' | -59.6 | NC_004683.1 | + | 40479 | 0.66 | 0.50534 |
Target: 5'- -gCGCGGCagguCGAGCUCGuCGaGGUCGAg -3' miRNA: 3'- gaGCGCCG----GCUUGAGCcGCcCUAGCU- -5' |
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18753 | 3' | -59.6 | NC_004683.1 | + | 40320 | 0.66 | 0.545919 |
Target: 5'- -aCGCGcGCCuGcAGCUCGGCGcGGGccugcUCGGc -3' miRNA: 3'- gaGCGC-CGG-C-UUGAGCCGC-CCU-----AGCU- -5' |
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18753 | 3' | -59.6 | NC_004683.1 | + | 33934 | 0.71 | 0.277044 |
Target: 5'- uUCGCgGGCCGcg-UCGGCuGGAUCGGc -3' miRNA: 3'- gAGCG-CCGGCuugAGCCGcCCUAGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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