miRNA display CGI


Results 41 - 60 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18754 3' -62.3 NC_004683.1 + 8538 0.67 0.292171
Target:  5'- aGGGCggCC-ACCGCAcCGGCCugaucGCCGUGGc -3'
miRNA:   3'- -UCCGg-GGuUGGCGU-GCCGG-----CGGUACU- -5'
18754 3' -62.3 NC_004683.1 + 55009 0.67 0.292171
Target:  5'- cGGCCUCGAucCCGCAuuCGGCgGCUggGGa -3'
miRNA:   3'- uCCGGGGUU--GGCGU--GCCGgCGGuaCU- -5'
18754 3' -62.3 NC_004683.1 + 51408 0.68 0.285225
Target:  5'- -cGCCUCGACCGUuucGCGGCUGgCGuUGAg -3'
miRNA:   3'- ucCGGGGUUGGCG---UGCCGGCgGU-ACU- -5'
18754 3' -62.3 NC_004683.1 + 2222 0.68 0.271724
Target:  5'- cAGGCCC--GCCaGCACGGCCacgcccGCCAc-- -3'
miRNA:   3'- -UCCGGGguUGG-CGUGCCGG------CGGUacu -5'
18754 3' -62.3 NC_004683.1 + 21687 0.68 0.265168
Target:  5'- -cGCCCCAGCCGCccucaccccACGcGCCGaUgGUGAu -3'
miRNA:   3'- ucCGGGGUUGGCG---------UGC-CGGC-GgUACU- -5'
18754 3' -62.3 NC_004683.1 + 25684 0.68 0.264519
Target:  5'- aGGGUgCCGucuuugcGCUGCugaugaacugcgACGGCCGCCGUGc -3'
miRNA:   3'- -UCCGgGGU-------UGGCG------------UGCCGGCGGUACu -5'
18754 3' -62.3 NC_004683.1 + 25560 0.68 0.264519
Target:  5'- -cGCCCUGGCCGCggucggcaacggcACGGCgGCCGUc- -3'
miRNA:   3'- ucCGGGGUUGGCG-------------UGCCGgCGGUAcu -5'
18754 3' -62.3 NC_004683.1 + 28888 0.68 0.263872
Target:  5'- gGGaGCUCCucgaccagcguCCGCAgGGCCGCCAa-- -3'
miRNA:   3'- -UC-CGGGGuu---------GGCGUgCCGGCGGUacu -5'
18754 3' -62.3 NC_004683.1 + 18963 0.68 0.258741
Target:  5'- cGGGCCgCCucCUGCGgaucgaaguCGGgCGCCGUGAa -3'
miRNA:   3'- -UCCGG-GGuuGGCGU---------GCCgGCGGUACU- -5'
18754 3' -62.3 NC_004683.1 + 48845 0.68 0.258741
Target:  5'- uGGCCgCgAACuCG-ACGGCCGCaCAUGGg -3'
miRNA:   3'- uCCGG-GgUUG-GCgUGCCGGCG-GUACU- -5'
18754 3' -62.3 NC_004683.1 + 51485 0.68 0.258741
Target:  5'- cAGGCCgCGACaCGUGCGGUguCGCCcUGGc -3'
miRNA:   3'- -UCCGGgGUUG-GCGUGCCG--GCGGuACU- -5'
18754 3' -62.3 NC_004683.1 + 10027 0.69 0.246269
Target:  5'- -aGCCCCGcUCGuCACGGUCGCCGcGGu -3'
miRNA:   3'- ucCGGGGUuGGC-GUGCCGGCGGUaCU- -5'
18754 3' -62.3 NC_004683.1 + 28467 0.69 0.245659
Target:  5'- -uGCCCCGG-CGCaACGGCCGacugcguCCAUGAa -3'
miRNA:   3'- ucCGGGGUUgGCG-UGCCGGC-------GGUACU- -5'
18754 3' -62.3 NC_004683.1 + 11797 0.69 0.240222
Target:  5'- gGGuGUCCCAACCGUcgGCGuGCCGCUg--- -3'
miRNA:   3'- -UC-CGGGGUUGGCG--UGC-CGGCGGuacu -5'
18754 3' -62.3 NC_004683.1 + 50600 0.69 0.2343
Target:  5'- gAGGCCCUuuagcaccAGCCGCGCG-UC-CCAUGAa -3'
miRNA:   3'- -UCCGGGG--------UUGGCGUGCcGGcGGUACU- -5'
18754 3' -62.3 NC_004683.1 + 51931 0.69 0.228501
Target:  5'- -aGCUCgAGCgCGguCGGCCGCCGUGc -3'
miRNA:   3'- ucCGGGgUUG-GCguGCCGGCGGUACu -5'
18754 3' -62.3 NC_004683.1 + 15942 0.69 0.222823
Target:  5'- cGGCCUCAGCgGCcUGGCCgauguuGCCGUGc -3'
miRNA:   3'- uCCGGGGUUGgCGuGCCGG------CGGUACu -5'
18754 3' -62.3 NC_004683.1 + 2838 0.69 0.222823
Target:  5'- uGGCCgCCGccgaGCuCGcCGCGGCCGCCGc-- -3'
miRNA:   3'- uCCGG-GGU----UG-GC-GUGCCGGCGGUacu -5'
18754 3' -62.3 NC_004683.1 + 48624 0.69 0.222823
Target:  5'- uGGGCCCgcggacuccgCGACCaauGCACGGCgGCCGg-- -3'
miRNA:   3'- -UCCGGG----------GUUGG---CGUGCCGgCGGUacu -5'
18754 3' -62.3 NC_004683.1 + 41095 0.69 0.217267
Target:  5'- cGGCCCCGcGCCGCugccACGGCCgggGCCu--- -3'
miRNA:   3'- uCCGGGGU-UGGCG----UGCCGG---CGGuacu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.