miRNA display CGI


Results 21 - 40 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18754 3' -62.3 NC_004683.1 + 25610 0.66 0.342121
Target:  5'- cAGGCCgagccaCAGCgGCACGGCgucagcuucaaccaCGCCGUaGAa -3'
miRNA:   3'- -UCCGGg-----GUUGgCGUGCCG--------------GCGGUA-CU- -5'
18754 3' -62.3 NC_004683.1 + 55107 0.66 0.342121
Target:  5'- uGGGuguucccauCCCCAGCCGCcgaaugcgggaucgaGGCCGCCGa-- -3'
miRNA:   3'- -UCC---------GGGGUUGGCGug-------------CCGGCGGUacu -5'
18754 3' -62.3 NC_004683.1 + 515 0.66 0.336624
Target:  5'- -cGCCUCGACCGC-CGcGCCaGCCAc-- -3'
miRNA:   3'- ucCGGGGUUGGCGuGC-CGG-CGGUacu -5'
18754 3' -62.3 NC_004683.1 + 56795 0.67 0.331965
Target:  5'- gAGGUCCCGagcaccagcguugcaACCGagcCACGGCCggaaggcgcGCCAUGu -3'
miRNA:   3'- -UCCGGGGU---------------UGGC---GUGCCGG---------CGGUACu -5'
18754 3' -62.3 NC_004683.1 + 4741 0.67 0.328885
Target:  5'- cAGGCCCgCAACCGgGCcgacgaGGUccaCGCCcgGAu -3'
miRNA:   3'- -UCCGGG-GUUGGCgUG------CCG---GCGGuaCU- -5'
18754 3' -62.3 NC_004683.1 + 2198 0.67 0.328885
Target:  5'- uGGCCgCGACCGCcUGuGCCgcguGCCGUGu -3'
miRNA:   3'- uCCGGgGUUGGCGuGC-CGG----CGGUACu -5'
18754 3' -62.3 NC_004683.1 + 48933 0.67 0.328885
Target:  5'- uGGUCCCA--UGUGCGGCCGUCGa-- -3'
miRNA:   3'- uCCGGGGUugGCGUGCCGGCGGUacu -5'
18754 3' -62.3 NC_004683.1 + 15867 0.67 0.328885
Target:  5'- cGGCCa-GGCCGCugaGGCCGCUGaGAa -3'
miRNA:   3'- uCCGGggUUGGCGug-CCGGCGGUaCU- -5'
18754 3' -62.3 NC_004683.1 + 53589 0.67 0.321277
Target:  5'- cGGCCgC-ACCGC-CGGCCGCg---- -3'
miRNA:   3'- uCCGGgGuUGGCGuGCCGGCGguacu -5'
18754 3' -62.3 NC_004683.1 + 18015 0.67 0.321277
Target:  5'- cGGGUCCC-ACUGCAUGG-UGCCGUc- -3'
miRNA:   3'- -UCCGGGGuUGGCGUGCCgGCGGUAcu -5'
18754 3' -62.3 NC_004683.1 + 20673 0.67 0.313802
Target:  5'- uGGUgCCGauguugaucGCCGCACcGCCGCCAc-- -3'
miRNA:   3'- uCCGgGGU---------UGGCGUGcCGGCGGUacu -5'
18754 3' -62.3 NC_004683.1 + 25221 0.67 0.313062
Target:  5'- cAGGCCgCUAcCCGCaccggugACGGCgGCCAgGAc -3'
miRNA:   3'- -UCCGG-GGUuGGCG-------UGCCGgCGGUaCU- -5'
18754 3' -62.3 NC_004683.1 + 11073 0.67 0.313062
Target:  5'- uGGCCCCAcccauuggcguaaGCCuGUcCGGCCGCguUGc -3'
miRNA:   3'- uCCGGGGU-------------UGG-CGuGCCGGCGguACu -5'
18754 3' -62.3 NC_004683.1 + 51642 0.67 0.309381
Target:  5'- gAGGCCCUcguucugcgugcgcuGGCgGCGCGcCUGCCGUGc -3'
miRNA:   3'- -UCCGGGG---------------UUGgCGUGCcGGCGGUACu -5'
18754 3' -62.3 NC_004683.1 + 5155 0.67 0.30646
Target:  5'- aGGGCgCCAGCgacaacgugCGCGCcGCCGCCAc-- -3'
miRNA:   3'- -UCCGgGGUUG---------GCGUGcCGGCGGUacu -5'
18754 3' -62.3 NC_004683.1 + 13018 0.67 0.30646
Target:  5'- cGGCCaCCggUgGgGCGGCCGUCGa-- -3'
miRNA:   3'- uCCGG-GGuuGgCgUGCCGGCGGUacu -5'
18754 3' -62.3 NC_004683.1 + 29996 0.67 0.30646
Target:  5'- cGGCUCCAacgcucACUGCGuCGGCUGCCc--- -3'
miRNA:   3'- uCCGGGGU------UGGCGU-GCCGGCGGuacu -5'
18754 3' -62.3 NC_004683.1 + 24151 0.67 0.29925
Target:  5'- gAGGCgaucgCCGACCuGCACaaGGCCGCguCAUGAc -3'
miRNA:   3'- -UCCGg----GGUUGG-CGUG--CCGGCG--GUACU- -5'
18754 3' -62.3 NC_004683.1 + 54250 0.67 0.29925
Target:  5'- uGGCCUUGAUgagCGCGCGGCCGU--UGAc -3'
miRNA:   3'- uCCGGGGUUG---GCGUGCCGGCGguACU- -5'
18754 3' -62.3 NC_004683.1 + 46446 0.67 0.292171
Target:  5'- cAGGUCUUggAGCCGCuguuccgucCGGCCGCCGaGAu -3'
miRNA:   3'- -UCCGGGG--UUGGCGu--------GCCGGCGGUaCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.