miRNA display CGI


Results 21 - 40 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18754 3' -62.3 NC_004683.1 + 11797 0.69 0.240222
Target:  5'- gGGuGUCCCAACCGUcgGCGuGCCGCUg--- -3'
miRNA:   3'- -UC-CGGGGUUGGCG--UGC-CGGCGGuacu -5'
18754 3' -62.3 NC_004683.1 + 12719 0.66 0.344496
Target:  5'- cGGGCCCagCAGCgGCGCcGCgGCCAg-- -3'
miRNA:   3'- -UCCGGG--GUUGgCGUGcCGgCGGUacu -5'
18754 3' -62.3 NC_004683.1 + 13018 0.67 0.30646
Target:  5'- cGGCCaCCggUgGgGCGGCCGUCGa-- -3'
miRNA:   3'- uCCGG-GGuuGgCgUGCCGGCGGUacu -5'
18754 3' -62.3 NC_004683.1 + 15867 0.67 0.328885
Target:  5'- cGGCCa-GGCCGCugaGGCCGCUGaGAa -3'
miRNA:   3'- uCCGGggUUGGCGug-CCGGCGGUaCU- -5'
18754 3' -62.3 NC_004683.1 + 15942 0.69 0.222823
Target:  5'- cGGCCUCAGCgGCcUGGCCgauguuGCCGUGc -3'
miRNA:   3'- uCCGGGGUUGgCGuGCCGG------CGGUACu -5'
18754 3' -62.3 NC_004683.1 + 18015 0.67 0.321277
Target:  5'- cGGGUCCC-ACUGCAUGG-UGCCGUc- -3'
miRNA:   3'- -UCCGGGGuUGGCGUGCCgGCGGUAcu -5'
18754 3' -62.3 NC_004683.1 + 18963 0.68 0.258741
Target:  5'- cGGGCCgCCucCUGCGgaucgaaguCGGgCGCCGUGAa -3'
miRNA:   3'- -UCCGG-GGuuGGCGU---------GCCgGCGGUACU- -5'
18754 3' -62.3 NC_004683.1 + 20127 0.69 0.21022
Target:  5'- cGGgCCCAACCGCGCcguaucaccggucuGGCCGCgAc-- -3'
miRNA:   3'- uCCgGGGUUGGCGUG--------------CCGGCGgUacu -5'
18754 3' -62.3 NC_004683.1 + 20508 0.72 0.151239
Target:  5'- uGGCCCCugcACCGC-CGguGCCGCCGUu- -3'
miRNA:   3'- uCCGGGGu--UGGCGuGC--CGGCGGUAcu -5'
18754 3' -62.3 NC_004683.1 + 20673 0.67 0.313802
Target:  5'- uGGUgCCGauguugaucGCCGCACcGCCGCCAc-- -3'
miRNA:   3'- uCCGgGGU---------UGGCGUGcCGGCGGUacu -5'
18754 3' -62.3 NC_004683.1 + 21687 0.68 0.265168
Target:  5'- -cGCCCCAGCCGCccucaccccACGcGCCGaUgGUGAu -3'
miRNA:   3'- ucCGGGGUUGGCG---------UGC-CGGC-GgUACU- -5'
18754 3' -62.3 NC_004683.1 + 21933 0.66 0.352499
Target:  5'- cGGCaauccgCCCGGCgGUggcggGCGGCCGCCGa-- -3'
miRNA:   3'- uCCG------GGGUUGgCG-----UGCCGGCGGUacu -5'
18754 3' -62.3 NC_004683.1 + 24003 0.72 0.147296
Target:  5'- cGGCCCgAcgauGCCGU-CGGCCGCCAc-- -3'
miRNA:   3'- uCCGGGgU----UGGCGuGCCGGCGGUacu -5'
18754 3' -62.3 NC_004683.1 + 24151 0.67 0.29925
Target:  5'- gAGGCgaucgCCGACCuGCACaaGGCCGCguCAUGAc -3'
miRNA:   3'- -UCCGg----GGUUGG-CGUG--CCGGCG--GUACU- -5'
18754 3' -62.3 NC_004683.1 + 24696 0.71 0.159413
Target:  5'- gAGGCCaUGGCCGCGC-GCCGCCGcGAc -3'
miRNA:   3'- -UCCGGgGUUGGCGUGcCGGCGGUaCU- -5'
18754 3' -62.3 NC_004683.1 + 24780 0.66 0.368896
Target:  5'- cGGUCgCGGCgGCGC-GCgGCCAUGGc -3'
miRNA:   3'- uCCGGgGUUGgCGUGcCGgCGGUACU- -5'
18754 3' -62.3 NC_004683.1 + 24890 0.66 0.344496
Target:  5'- cGGCaUCGcCCGCAagaccCGGCCGCUGUGGc -3'
miRNA:   3'- uCCGgGGUuGGCGU-----GCCGGCGGUACU- -5'
18754 3' -62.3 NC_004683.1 + 25221 0.67 0.313062
Target:  5'- cAGGCCgCUAcCCGCaccggugACGGCgGCCAgGAc -3'
miRNA:   3'- -UCCGG-GGUuGGCG-------UGCCGgCGGUaCU- -5'
18754 3' -62.3 NC_004683.1 + 25255 0.7 0.181613
Target:  5'- uGGCCCCGA--GCAC-GCCGCCgAUGAc -3'
miRNA:   3'- uCCGGGGUUggCGUGcCGGCGG-UACU- -5'
18754 3' -62.3 NC_004683.1 + 25560 0.68 0.264519
Target:  5'- -cGCCCUGGCCGCggucggcaacggcACGGCgGCCGUc- -3'
miRNA:   3'- ucCGGGGUUGGCG-------------UGCCGgCGGUAcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.