miRNA display CGI


Results 1 - 20 of 89 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18754 3' -62.3 NC_004683.1 + 268 0.72 0.147296
Target:  5'- gGGGCCCCAgucaucggaACCG-GCGGCUGCUggGGu -3'
miRNA:   3'- -UCCGGGGU---------UGGCgUGCCGGCGGuaCU- -5'
18754 3' -62.3 NC_004683.1 + 515 0.66 0.336624
Target:  5'- -cGCCUCGACCGC-CGcGCCaGCCAc-- -3'
miRNA:   3'- ucCGGGGUUGGCGuGC-CGG-CGGUacu -5'
18754 3' -62.3 NC_004683.1 + 1676 0.7 0.191236
Target:  5'- gGGGCCUCGACgaucgcaGCGCGGCCGgCGc-- -3'
miRNA:   3'- -UCCGGGGUUGg------CGUGCCGGCgGUacu -5'
18754 3' -62.3 NC_004683.1 + 1739 1.08 0.000238
Target:  5'- gAGGCCCCAACCGCACGGCCGCCAUGAg -3'
miRNA:   3'- -UCCGGGGUUGGCGUGCCGGCGGUACU- -5'
18754 3' -62.3 NC_004683.1 + 2198 0.67 0.328885
Target:  5'- uGGCCgCGACCGCcUGuGCCgcguGCCGUGu -3'
miRNA:   3'- uCCGGgGUUGGCGuGC-CGG----CGGUACu -5'
18754 3' -62.3 NC_004683.1 + 2222 0.68 0.271724
Target:  5'- cAGGCCC--GCCaGCACGGCCacgcccGCCAc-- -3'
miRNA:   3'- -UCCGGGguUGG-CGUGCCGG------CGGUacu -5'
18754 3' -62.3 NC_004683.1 + 2838 0.69 0.222823
Target:  5'- uGGCCgCCGccgaGCuCGcCGCGGCCGCCGc-- -3'
miRNA:   3'- uCCGG-GGU----UG-GC-GUGCCGGCGGUacu -5'
18754 3' -62.3 NC_004683.1 + 4741 0.67 0.328885
Target:  5'- cAGGCCCgCAACCGgGCcgacgaGGUccaCGCCcgGAu -3'
miRNA:   3'- -UCCGGG-GUUGGCgUG------CCG---GCGGuaCU- -5'
18754 3' -62.3 NC_004683.1 + 5031 0.74 0.093236
Target:  5'- cGGCCUCGACgCGCAugcgccgcUGGCCGCCGcucUGAg -3'
miRNA:   3'- uCCGGGGUUG-GCGU--------GCCGGCGGU---ACU- -5'
18754 3' -62.3 NC_004683.1 + 5085 0.66 0.358995
Target:  5'- cGGGCUCCAGgauggcgUCGCggucguagucgccACGGCCGCCcUGc -3'
miRNA:   3'- -UCCGGGGUU-------GGCG-------------UGCCGGCGGuACu -5'
18754 3' -62.3 NC_004683.1 + 5155 0.67 0.30646
Target:  5'- aGGGCgCCAGCgacaacgugCGCGCcGCCGCCAc-- -3'
miRNA:   3'- -UCCGgGGUUG---------GCGUGcCGGCGGUacu -5'
18754 3' -62.3 NC_004683.1 + 5585 0.77 0.063416
Target:  5'- cGGcGUCCCAgcuccACUGCACGGCCGCCGaGGa -3'
miRNA:   3'- -UC-CGGGGU-----UGGCGUGCCGGCGGUaCU- -5'
18754 3' -62.3 NC_004683.1 + 5948 0.72 0.132094
Target:  5'- cGGCgagcccuCCCAGCUGCugGGCCgGCCgGUGGg -3'
miRNA:   3'- uCCG-------GGGUUGGCGugCCGG-CGG-UACU- -5'
18754 3' -62.3 NC_004683.1 + 6827 0.66 0.377289
Target:  5'- cGGCagcgaCAGCa-CGCGGCCGCCcgGGc -3'
miRNA:   3'- uCCGgg---GUUGgcGUGCCGGCGGuaCU- -5'
18754 3' -62.3 NC_004683.1 + 7019 0.66 0.368896
Target:  5'- -cGCCC--GCCGCcaguCGGCCGCCucggucucaGUGAa -3'
miRNA:   3'- ucCGGGguUGGCGu---GCCGGCGG---------UACU- -5'
18754 3' -62.3 NC_004683.1 + 8538 0.67 0.292171
Target:  5'- aGGGCggCC-ACCGCAcCGGCCugaucGCCGUGGc -3'
miRNA:   3'- -UCCGg-GGuUGGCGU-GCCGG-----CGGUACU- -5'
18754 3' -62.3 NC_004683.1 + 10027 0.69 0.246269
Target:  5'- -aGCCCCGcUCGuCACGGUCGCCGcGGu -3'
miRNA:   3'- ucCGGGGUuGGC-GUGCCGGCGGUaCU- -5'
18754 3' -62.3 NC_004683.1 + 10554 0.66 0.360633
Target:  5'- gGGGCCaguaaCGACCGCAUcGUCGCuCAggcUGAg -3'
miRNA:   3'- -UCCGGg----GUUGGCGUGcCGGCG-GU---ACU- -5'
18754 3' -62.3 NC_004683.1 + 11073 0.67 0.313062
Target:  5'- uGGCCCCAcccauuggcguaaGCCuGUcCGGCCGCguUGc -3'
miRNA:   3'- uCCGGGGU-------------UGG-CGuGCCGGCGguACu -5'
18754 3' -62.3 NC_004683.1 + 11506 0.74 0.093236
Target:  5'- uGGCCCCA-CCGCACGaGCagcguucggCGCCGUGc -3'
miRNA:   3'- uCCGGGGUuGGCGUGC-CG---------GCGGUACu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.