miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18754 3' -62.3 NC_004683.1 + 56795 0.67 0.331965
Target:  5'- gAGGUCCCGagcaccagcguugcaACCGagcCACGGCCggaaggcgcGCCAUGu -3'
miRNA:   3'- -UCCGGGGU---------------UGGC---GUGCCGG---------CGGUACu -5'
18754 3' -62.3 NC_004683.1 + 56489 0.71 0.176965
Target:  5'- cAGGUCCCGACgcaUGCcCGGCCGCaccgCAUGGc -3'
miRNA:   3'- -UCCGGGGUUG---GCGuGCCGGCG----GUACU- -5'
18754 3' -62.3 NC_004683.1 + 55107 0.66 0.342121
Target:  5'- uGGGuguucccauCCCCAGCCGCcgaaugcgggaucgaGGCCGCCGa-- -3'
miRNA:   3'- -UCC---------GGGGUUGGCGug-------------CCGGCGGUacu -5'
18754 3' -62.3 NC_004683.1 + 55009 0.67 0.292171
Target:  5'- cGGCCUCGAucCCGCAuuCGGCgGCUggGGa -3'
miRNA:   3'- uCCGGGGUU--GGCGU--GCCGgCGGuaCU- -5'
18754 3' -62.3 NC_004683.1 + 54250 0.67 0.29925
Target:  5'- uGGCCUUGAUgagCGCGCGGCCGU--UGAc -3'
miRNA:   3'- uCCGGGGUUG---GCGUGCCGGCGguACU- -5'
18754 3' -62.3 NC_004683.1 + 53875 0.75 0.079101
Target:  5'- aGGGCCCgAuuCCGCugGGCUGcCCAUGu -3'
miRNA:   3'- -UCCGGGgUu-GGCGugCCGGC-GGUACu -5'
18754 3' -62.3 NC_004683.1 + 53748 0.72 0.132447
Target:  5'- cGGCCCgAucagcuggACUGCACGGCuCGCCAa-- -3'
miRNA:   3'- uCCGGGgU--------UGGCGUGCCG-GCGGUacu -5'
18754 3' -62.3 NC_004683.1 + 53709 0.7 0.201304
Target:  5'- cGGCCCCAcAUgGUGCGGCUGCgGUa- -3'
miRNA:   3'- uCCGGGGU-UGgCGUGCCGGCGgUAcu -5'
18754 3' -62.3 NC_004683.1 + 53635 0.7 0.201304
Target:  5'- cAGGCCC--GCCGCGaccUGGCCGCgGcUGAg -3'
miRNA:   3'- -UCCGGGguUGGCGU---GCCGGCGgU-ACU- -5'
18754 3' -62.3 NC_004683.1 + 53589 0.67 0.321277
Target:  5'- cGGCCgC-ACCGC-CGGCCGCg---- -3'
miRNA:   3'- uCCGGgGuUGGCGuGCCGGCGguacu -5'
18754 3' -62.3 NC_004683.1 + 52957 0.66 0.368896
Target:  5'- uGGCCCagcGCUGCAgGGUuCGCCGcUGGa -3'
miRNA:   3'- uCCGGGgu-UGGCGUgCCG-GCGGU-ACU- -5'
18754 3' -62.3 NC_004683.1 + 51931 0.69 0.228501
Target:  5'- -aGCUCgAGCgCGguCGGCCGCCGUGc -3'
miRNA:   3'- ucCGGGgUUG-GCguGCCGGCGGUACu -5'
18754 3' -62.3 NC_004683.1 + 51713 0.66 0.377289
Target:  5'- cAGGCCCUgcagGAgUGCuACGGCCGCgAc-- -3'
miRNA:   3'- -UCCGGGG----UUgGCG-UGCCGGCGgUacu -5'
18754 3' -62.3 NC_004683.1 + 51642 0.67 0.309381
Target:  5'- gAGGCCCUcguucugcgugcgcuGGCgGCGCGcCUGCCGUGc -3'
miRNA:   3'- -UCCGGGG---------------UUGgCGUGCcGGCGGUACu -5'
18754 3' -62.3 NC_004683.1 + 51485 0.68 0.258741
Target:  5'- cAGGCCgCGACaCGUGCGGUguCGCCcUGGc -3'
miRNA:   3'- -UCCGGgGUUG-GCGUGCCG--GCGGuACU- -5'
18754 3' -62.3 NC_004683.1 + 51408 0.68 0.285225
Target:  5'- -cGCCUCGACCGUuucGCGGCUGgCGuUGAg -3'
miRNA:   3'- ucCGGGGUUGGCG---UGCCGGCgGU-ACU- -5'
18754 3' -62.3 NC_004683.1 + 51285 0.66 0.343703
Target:  5'- gAGGCaCUCAucgccgaGCUGgAgGGCCGCCgAUGAa -3'
miRNA:   3'- -UCCG-GGGU-------UGGCgUgCCGGCGG-UACU- -5'
18754 3' -62.3 NC_004683.1 + 51198 0.66 0.359813
Target:  5'- cGGCCCUucgcgccGGCCGCGCc-CCGCCAg-- -3'
miRNA:   3'- uCCGGGG-------UUGGCGUGccGGCGGUacu -5'
18754 3' -62.3 NC_004683.1 + 50966 0.74 0.098458
Target:  5'- cAGcGCUCCGGCCGCACccGCCGCCAa-- -3'
miRNA:   3'- -UC-CGGGGUUGGCGUGc-CGGCGGUacu -5'
18754 3' -62.3 NC_004683.1 + 50600 0.69 0.2343
Target:  5'- gAGGCCCUuuagcaccAGCCGCGCG-UC-CCAUGAa -3'
miRNA:   3'- -UCCGGGG--------UUGGCGUGCcGGcGGUACU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.