miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18754 3' -62.3 NC_004683.1 + 1739 1.08 0.000238
Target:  5'- gAGGCCCCAACCGCACGGCCGCCAUGAg -3'
miRNA:   3'- -UCCGGGGUUGGCGUGCCGGCGGUACU- -5'
18754 3' -62.3 NC_004683.1 + 42658 0.81 0.030611
Target:  5'- cGGCCCCGACCGcCGCGGCgCGCUcgGc -3'
miRNA:   3'- uCCGGGGUUGGC-GUGCCG-GCGGuaCu -5'
18754 3' -62.3 NC_004683.1 + 5585 0.77 0.063416
Target:  5'- cGGcGUCCCAgcuccACUGCACGGCCGCCGaGGa -3'
miRNA:   3'- -UC-CGGGGU-----UGGCGUGCCGGCGGUaCU- -5'
18754 3' -62.3 NC_004683.1 + 53875 0.75 0.079101
Target:  5'- aGGGCCCgAuuCCGCugGGCUGcCCAUGu -3'
miRNA:   3'- -UCCGGGgUu-GGCGugCCGGC-GGUACu -5'
18754 3' -62.3 NC_004683.1 + 41182 0.75 0.081306
Target:  5'- aAGGCCCCGGCCGUggcagcggcgcGgGGCCGCUuacuacgugGUGAu -3'
miRNA:   3'- -UCCGGGGUUGGCG-----------UgCCGGCGG---------UACU- -5'
18754 3' -62.3 NC_004683.1 + 5031 0.74 0.093236
Target:  5'- cGGCCUCGACgCGCAugcgccgcUGGCCGCCGcucUGAg -3'
miRNA:   3'- uCCGGGGUUG-GCGU--------GCCGGCGGU---ACU- -5'
18754 3' -62.3 NC_004683.1 + 11506 0.74 0.093236
Target:  5'- uGGCCCCA-CCGCACGaGCagcguucggCGCCGUGc -3'
miRNA:   3'- uCCGGGGUuGGCGUGC-CG---------GCGGUACu -5'
18754 3' -62.3 NC_004683.1 + 50966 0.74 0.098458
Target:  5'- cAGcGCUCCGGCCGCACccGCCGCCAa-- -3'
miRNA:   3'- -UC-CGGGGUUGGCGUGc-CGGCGGUacu -5'
18754 3' -62.3 NC_004683.1 + 46606 0.73 0.109742
Target:  5'- aGGGCCgCGACgGCAaGGCCGCCGc-- -3'
miRNA:   3'- -UCCGGgGUUGgCGUgCCGGCGGUacu -5'
18754 3' -62.3 NC_004683.1 + 5948 0.72 0.132094
Target:  5'- cGGCgagcccuCCCAGCUGCugGGCCgGCCgGUGGg -3'
miRNA:   3'- uCCG-------GGGUUGGCGugCCGG-CGG-UACU- -5'
18754 3' -62.3 NC_004683.1 + 53748 0.72 0.132447
Target:  5'- cGGCCCgAucagcuggACUGCACGGCuCGCCAa-- -3'
miRNA:   3'- uCCGGGgU--------UGGCGUGCCG-GCGGUacu -5'
18754 3' -62.3 NC_004683.1 + 27546 0.72 0.132447
Target:  5'- uGGCUCCAGCgCGCucgcuGCGGCUGCCugcgguGUGAg -3'
miRNA:   3'- uCCGGGGUUG-GCG-----UGCCGGCGG------UACU- -5'
18754 3' -62.3 NC_004683.1 + 30615 0.72 0.136024
Target:  5'- cGGCaCCCGAaCGUaACGGCCGCCAUc- -3'
miRNA:   3'- uCCG-GGGUUgGCG-UGCCGGCGGUAcu -5'
18754 3' -62.3 NC_004683.1 + 24003 0.72 0.147296
Target:  5'- cGGCCCgAcgauGCCGU-CGGCCGCCAc-- -3'
miRNA:   3'- uCCGGGgU----UGGCGuGCCGGCGGUacu -5'
18754 3' -62.3 NC_004683.1 + 268 0.72 0.147296
Target:  5'- gGGGCCCCAgucaucggaACCG-GCGGCUGCUggGGu -3'
miRNA:   3'- -UCCGGGGU---------UGGCgUGCCGGCGGuaCU- -5'
18754 3' -62.3 NC_004683.1 + 20508 0.72 0.151239
Target:  5'- uGGCCCCugcACCGC-CGguGCCGCCGUu- -3'
miRNA:   3'- uCCGGGGu--UGGCGuGC--CGGCGGUAcu -5'
18754 3' -62.3 NC_004683.1 + 24696 0.71 0.159413
Target:  5'- gAGGCCaUGGCCGCGC-GCCGCCGcGAc -3'
miRNA:   3'- -UCCGGgGUUGGCGUGcCGGCGGUaCU- -5'
18754 3' -62.3 NC_004683.1 + 56489 0.71 0.176965
Target:  5'- cAGGUCCCGACgcaUGCcCGGCCGCaccgCAUGGc -3'
miRNA:   3'- -UCCGGGGUUG---GCGuGCCGGCG----GUACU- -5'
18754 3' -62.3 NC_004683.1 + 49322 0.7 0.181144
Target:  5'- -cGCCCCGACUGCgcgcuguGCGGCUGCCc--- -3'
miRNA:   3'- ucCGGGGUUGGCG-------UGCCGGCGGuacu -5'
18754 3' -62.3 NC_004683.1 + 25255 0.7 0.181613
Target:  5'- uGGCCCCGA--GCAC-GCCGCCgAUGAc -3'
miRNA:   3'- uCCGGGGUUggCGUGcCGGCGG-UACU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.