miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18754 3' -62.3 NC_004683.1 + 8538 0.67 0.292171
Target:  5'- aGGGCggCC-ACCGCAcCGGCCugaucGCCGUGGc -3'
miRNA:   3'- -UCCGg-GGuUGGCGU-GCCGG-----CGGUACU- -5'
18754 3' -62.3 NC_004683.1 + 53709 0.7 0.201304
Target:  5'- cGGCCCCAcAUgGUGCGGCUGCgGUa- -3'
miRNA:   3'- uCCGGGGU-UGgCGUGCCGGCGgUAcu -5'
18754 3' -62.3 NC_004683.1 + 27946 0.7 0.206508
Target:  5'- cGGCCCCugccucGCCGgGCGG-CGCCAa-- -3'
miRNA:   3'- uCCGGGGu-----UGGCgUGCCgGCGGUacu -5'
18754 3' -62.3 NC_004683.1 + 41095 0.69 0.217267
Target:  5'- cGGCCCCGcGCCGCugccACGGCCgggGCCu--- -3'
miRNA:   3'- uCCGGGGU-UGGCG----UGCCGG---CGGuacu -5'
18754 3' -62.3 NC_004683.1 + 48624 0.69 0.222823
Target:  5'- uGGGCCCgcggacuccgCGACCaauGCACGGCgGCCGg-- -3'
miRNA:   3'- -UCCGGG----------GUUGG---CGUGCCGgCGGUacu -5'
18754 3' -62.3 NC_004683.1 + 28467 0.69 0.245659
Target:  5'- -uGCCCCGG-CGCaACGGCCGacugcguCCAUGAa -3'
miRNA:   3'- ucCGGGGUUgGCG-UGCCGGC-------GGUACU- -5'
18754 3' -62.3 NC_004683.1 + 48845 0.68 0.258741
Target:  5'- uGGCCgCgAACuCG-ACGGCCGCaCAUGGg -3'
miRNA:   3'- uCCGG-GgUUG-GCgUGCCGGCG-GUACU- -5'
18754 3' -62.3 NC_004683.1 + 28888 0.68 0.263872
Target:  5'- gGGaGCUCCucgaccagcguCCGCAgGGCCGCCAa-- -3'
miRNA:   3'- -UC-CGGGGuu---------GGCGUgCCGGCGGUacu -5'
18754 3' -62.3 NC_004683.1 + 25560 0.68 0.264519
Target:  5'- -cGCCCUGGCCGCggucggcaacggcACGGCgGCCGUc- -3'
miRNA:   3'- ucCGGGGUUGGCG-------------UGCCGgCGGUAcu -5'
18754 3' -62.3 NC_004683.1 + 53635 0.7 0.201304
Target:  5'- cAGGCCC--GCCGCGaccUGGCCGCgGcUGAg -3'
miRNA:   3'- -UCCGGGguUGGCGU---GCCGGCGgU-ACU- -5'
18754 3' -62.3 NC_004683.1 + 1676 0.7 0.191236
Target:  5'- gGGGCCUCGACgaucgcaGCGCGGCCGgCGc-- -3'
miRNA:   3'- -UCCGGGGUUGg------CGUGCCGGCgGUacu -5'
18754 3' -62.3 NC_004683.1 + 48885 0.7 0.18637
Target:  5'- gAGGUgaCCCGgugaggguaucACCGUGCGGCaGCCAUGGg -3'
miRNA:   3'- -UCCG--GGGU-----------UGGCGUGCCGgCGGUACU- -5'
18754 3' -62.3 NC_004683.1 + 11506 0.74 0.093236
Target:  5'- uGGCCCCA-CCGCACGaGCagcguucggCGCCGUGc -3'
miRNA:   3'- uCCGGGGUuGGCGUGC-CG---------GCGGUACu -5'
18754 3' -62.3 NC_004683.1 + 50966 0.74 0.098458
Target:  5'- cAGcGCUCCGGCCGCACccGCCGCCAa-- -3'
miRNA:   3'- -UC-CGGGGUUGGCGUGc-CGGCGGUacu -5'
18754 3' -62.3 NC_004683.1 + 46606 0.73 0.109742
Target:  5'- aGGGCCgCGACgGCAaGGCCGCCGc-- -3'
miRNA:   3'- -UCCGGgGUUGgCGUgCCGGCGGUacu -5'
18754 3' -62.3 NC_004683.1 + 5948 0.72 0.132094
Target:  5'- cGGCgagcccuCCCAGCUGCugGGCCgGCCgGUGGg -3'
miRNA:   3'- uCCG-------GGGUUGGCGugCCGG-CGG-UACU- -5'
18754 3' -62.3 NC_004683.1 + 53748 0.72 0.132447
Target:  5'- cGGCCCgAucagcuggACUGCACGGCuCGCCAa-- -3'
miRNA:   3'- uCCGGGgU--------UGGCGUGCCG-GCGGUacu -5'
18754 3' -62.3 NC_004683.1 + 24696 0.71 0.159413
Target:  5'- gAGGCCaUGGCCGCGC-GCCGCCGcGAc -3'
miRNA:   3'- -UCCGGgGUUGGCGUGcCGGCGGUaCU- -5'
18754 3' -62.3 NC_004683.1 + 56489 0.71 0.176965
Target:  5'- cAGGUCCCGACgcaUGCcCGGCCGCaccgCAUGGc -3'
miRNA:   3'- -UCCGGGGUUG---GCGuGCCGGCG----GUACU- -5'
18754 3' -62.3 NC_004683.1 + 49322 0.7 0.181144
Target:  5'- -cGCCCCGACUGCgcgcuguGCGGCUGCCc--- -3'
miRNA:   3'- ucCGGGGUUGGCG-------UGCCGGCGGuacu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.