Results 1 - 20 of 89 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18754 | 3' | -62.3 | NC_004683.1 | + | 1739 | 1.08 | 0.000238 |
Target: 5'- gAGGCCCCAACCGCACGGCCGCCAUGAg -3' miRNA: 3'- -UCCGGGGUUGGCGUGCCGGCGGUACU- -5' |
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18754 | 3' | -62.3 | NC_004683.1 | + | 51931 | 0.69 | 0.228501 |
Target: 5'- -aGCUCgAGCgCGguCGGCCGCCGUGc -3' miRNA: 3'- ucCGGGgUUG-GCguGCCGGCGGUACu -5' |
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18754 | 3' | -62.3 | NC_004683.1 | + | 11797 | 0.69 | 0.240222 |
Target: 5'- gGGuGUCCCAACCGUcgGCGuGCCGCUg--- -3' miRNA: 3'- -UC-CGGGGUUGGCG--UGC-CGGCGGuacu -5' |
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18754 | 3' | -62.3 | NC_004683.1 | + | 6827 | 0.66 | 0.377289 |
Target: 5'- cGGCagcgaCAGCa-CGCGGCCGCCcgGGc -3' miRNA: 3'- uCCGgg---GUUGgcGUGCCGGCGGuaCU- -5' |
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18754 | 3' | -62.3 | NC_004683.1 | + | 5031 | 0.74 | 0.093236 |
Target: 5'- cGGCCUCGACgCGCAugcgccgcUGGCCGCCGcucUGAg -3' miRNA: 3'- uCCGGGGUUG-GCGU--------GCCGGCGGU---ACU- -5' |
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18754 | 3' | -62.3 | NC_004683.1 | + | 27546 | 0.72 | 0.132447 |
Target: 5'- uGGCUCCAGCgCGCucgcuGCGGCUGCCugcgguGUGAg -3' miRNA: 3'- uCCGGGGUUG-GCG-----UGCCGGCGG------UACU- -5' |
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18754 | 3' | -62.3 | NC_004683.1 | + | 268 | 0.72 | 0.147296 |
Target: 5'- gGGGCCCCAgucaucggaACCG-GCGGCUGCUggGGu -3' miRNA: 3'- -UCCGGGGU---------UGGCgUGCCGGCGGuaCU- -5' |
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18754 | 3' | -62.3 | NC_004683.1 | + | 24003 | 0.72 | 0.147296 |
Target: 5'- cGGCCCgAcgauGCCGU-CGGCCGCCAc-- -3' miRNA: 3'- uCCGGGgU----UGGCGuGCCGGCGGUacu -5' |
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18754 | 3' | -62.3 | NC_004683.1 | + | 46127 | 0.69 | 0.21022 |
Target: 5'- gGGGCacguCCCAcaucguggcgcgggACCGCuCGGCCGCCGc-- -3' miRNA: 3'- -UCCG----GGGU--------------UGGCGuGCCGGCGGUacu -5' |
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18754 | 3' | -62.3 | NC_004683.1 | + | 2838 | 0.69 | 0.222823 |
Target: 5'- uGGCCgCCGccgaGCuCGcCGCGGCCGCCGc-- -3' miRNA: 3'- uCCGG-GGU----UG-GC-GUGCCGGCGGUacu -5' |
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18754 | 3' | -62.3 | NC_004683.1 | + | 28708 | 0.69 | 0.211829 |
Target: 5'- -aGUCUCGGCCGU-CGGCCGCCAa-- -3' miRNA: 3'- ucCGGGGUUGGCGuGCCGGCGGUacu -5' |
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18754 | 3' | -62.3 | NC_004683.1 | + | 25255 | 0.7 | 0.181613 |
Target: 5'- uGGCCCCGA--GCAC-GCCGCCgAUGAc -3' miRNA: 3'- uCCGGGGUUggCGUGcCGGCGG-UACU- -5' |
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18754 | 3' | -62.3 | NC_004683.1 | + | 42658 | 0.81 | 0.030611 |
Target: 5'- cGGCCCCGACCGcCGCGGCgCGCUcgGc -3' miRNA: 3'- uCCGGGGUUGGC-GUGCCG-GCGGuaCu -5' |
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18754 | 3' | -62.3 | NC_004683.1 | + | 34019 | 0.69 | 0.217267 |
Target: 5'- cGGCCgauCCAGCCGaCGCGGcCCGCgAaGAa -3' miRNA: 3'- uCCGG---GGUUGGC-GUGCC-GGCGgUaCU- -5' |
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18754 | 3' | -62.3 | NC_004683.1 | + | 5585 | 0.77 | 0.063416 |
Target: 5'- cGGcGUCCCAgcuccACUGCACGGCCGCCGaGGa -3' miRNA: 3'- -UC-CGGGGU-----UGGCGUGCCGGCGGUaCU- -5' |
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18754 | 3' | -62.3 | NC_004683.1 | + | 20508 | 0.72 | 0.151239 |
Target: 5'- uGGCCCCugcACCGC-CGguGCCGCCGUu- -3' miRNA: 3'- uCCGGGGu--UGGCGuGC--CGGCGGUAcu -5' |
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18754 | 3' | -62.3 | NC_004683.1 | + | 15942 | 0.69 | 0.222823 |
Target: 5'- cGGCCUCAGCgGCcUGGCCgauguuGCCGUGc -3' miRNA: 3'- uCCGGGGUUGgCGuGCCGG------CGGUACu -5' |
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18754 | 3' | -62.3 | NC_004683.1 | + | 50600 | 0.69 | 0.2343 |
Target: 5'- gAGGCCCUuuagcaccAGCCGCGCG-UC-CCAUGAa -3' miRNA: 3'- -UCCGGGG--------UUGGCGUGCcGGcGGUACU- -5' |
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18754 | 3' | -62.3 | NC_004683.1 | + | 41182 | 0.75 | 0.081306 |
Target: 5'- aAGGCCCCGGCCGUggcagcggcgcGgGGCCGCUuacuacgugGUGAu -3' miRNA: 3'- -UCCGGGGUUGGCG-----------UgCCGGCGG---------UACU- -5' |
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18754 | 3' | -62.3 | NC_004683.1 | + | 30615 | 0.72 | 0.136024 |
Target: 5'- cGGCaCCCGAaCGUaACGGCCGCCAUc- -3' miRNA: 3'- uCCG-GGGUUgGCG-UGCCGGCGGUAcu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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