miRNA display CGI


Results 21 - 40 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18754 3' -62.3 NC_004683.1 + 48885 0.7 0.18637
Target:  5'- gAGGUgaCCCGgugaggguaucACCGUGCGGCaGCCAUGGg -3'
miRNA:   3'- -UCCG--GGGU-----------UGGCGUGCCGgCGGUACU- -5'
18754 3' -62.3 NC_004683.1 + 1676 0.7 0.191236
Target:  5'- gGGGCCUCGACgaucgcaGCGCGGCCGgCGc-- -3'
miRNA:   3'- -UCCGGGGUUGg------CGUGCCGGCgGUacu -5'
18754 3' -62.3 NC_004683.1 + 53635 0.7 0.201304
Target:  5'- cAGGCCC--GCCGCGaccUGGCCGCgGcUGAg -3'
miRNA:   3'- -UCCGGGguUGGCGU---GCCGGCGgU-ACU- -5'
18754 3' -62.3 NC_004683.1 + 53709 0.7 0.201304
Target:  5'- cGGCCCCAcAUgGUGCGGCUGCgGUa- -3'
miRNA:   3'- uCCGGGGU-UGgCGUGCCGGCGgUAcu -5'
18754 3' -62.3 NC_004683.1 + 27946 0.7 0.206508
Target:  5'- cGGCCCCugccucGCCGgGCGG-CGCCAa-- -3'
miRNA:   3'- uCCGGGGu-----UGGCgUGCCgGCGGUacu -5'
18754 3' -62.3 NC_004683.1 + 20127 0.69 0.21022
Target:  5'- cGGgCCCAACCGCGCcguaucaccggucuGGCCGCgAc-- -3'
miRNA:   3'- uCCgGGGUUGGCGUG--------------CCGGCGgUacu -5'
18754 3' -62.3 NC_004683.1 + 46127 0.69 0.21022
Target:  5'- gGGGCacguCCCAcaucguggcgcgggACCGCuCGGCCGCCGc-- -3'
miRNA:   3'- -UCCG----GGGU--------------UGGCGuGCCGGCGGUacu -5'
18754 3' -62.3 NC_004683.1 + 28708 0.69 0.211829
Target:  5'- -aGUCUCGGCCGU-CGGCCGCCAa-- -3'
miRNA:   3'- ucCGGGGUUGGCGuGCCGGCGGUacu -5'
18754 3' -62.3 NC_004683.1 + 41095 0.69 0.217267
Target:  5'- cGGCCCCGcGCCGCugccACGGCCgggGCCu--- -3'
miRNA:   3'- uCCGGGGU-UGGCG----UGCCGG---CGGuacu -5'
18754 3' -62.3 NC_004683.1 + 34019 0.69 0.217267
Target:  5'- cGGCCgauCCAGCCGaCGCGGcCCGCgAaGAa -3'
miRNA:   3'- uCCGG---GGUUGGC-GUGCC-GGCGgUaCU- -5'
18754 3' -62.3 NC_004683.1 + 2838 0.69 0.222823
Target:  5'- uGGCCgCCGccgaGCuCGcCGCGGCCGCCGc-- -3'
miRNA:   3'- uCCGG-GGU----UG-GC-GUGCCGGCGGUacu -5'
18754 3' -62.3 NC_004683.1 + 48624 0.69 0.222823
Target:  5'- uGGGCCCgcggacuccgCGACCaauGCACGGCgGCCGg-- -3'
miRNA:   3'- -UCCGGG----------GUUGG---CGUGCCGgCGGUacu -5'
18754 3' -62.3 NC_004683.1 + 15942 0.69 0.222823
Target:  5'- cGGCCUCAGCgGCcUGGCCgauguuGCCGUGc -3'
miRNA:   3'- uCCGGGGUUGgCGuGCCGG------CGGUACu -5'
18754 3' -62.3 NC_004683.1 + 51931 0.69 0.228501
Target:  5'- -aGCUCgAGCgCGguCGGCCGCCGUGc -3'
miRNA:   3'- ucCGGGgUUG-GCguGCCGGCGGUACu -5'
18754 3' -62.3 NC_004683.1 + 50600 0.69 0.2343
Target:  5'- gAGGCCCUuuagcaccAGCCGCGCG-UC-CCAUGAa -3'
miRNA:   3'- -UCCGGGG--------UUGGCGUGCcGGcGGUACU- -5'
18754 3' -62.3 NC_004683.1 + 11797 0.69 0.240222
Target:  5'- gGGuGUCCCAACCGUcgGCGuGCCGCUg--- -3'
miRNA:   3'- -UC-CGGGGUUGGCG--UGC-CGGCGGuacu -5'
18754 3' -62.3 NC_004683.1 + 28467 0.69 0.245659
Target:  5'- -uGCCCCGG-CGCaACGGCCGacugcguCCAUGAa -3'
miRNA:   3'- ucCGGGGUUgGCG-UGCCGGC-------GGUACU- -5'
18754 3' -62.3 NC_004683.1 + 10027 0.69 0.246269
Target:  5'- -aGCCCCGcUCGuCACGGUCGCCGcGGu -3'
miRNA:   3'- ucCGGGGUuGGC-GUGCCGGCGGUaCU- -5'
18754 3' -62.3 NC_004683.1 + 48845 0.68 0.258741
Target:  5'- uGGCCgCgAACuCG-ACGGCCGCaCAUGGg -3'
miRNA:   3'- uCCGG-GgUUG-GCgUGCCGGCG-GUACU- -5'
18754 3' -62.3 NC_004683.1 + 51485 0.68 0.258741
Target:  5'- cAGGCCgCGACaCGUGCGGUguCGCCcUGGc -3'
miRNA:   3'- -UCCGGgGUUG-GCGUGCCG--GCGGuACU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.