Results 21 - 40 of 89 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18754 | 3' | -62.3 | NC_004683.1 | + | 24780 | 0.66 | 0.368896 |
Target: 5'- cGGUCgCGGCgGCGC-GCgGCCAUGGc -3' miRNA: 3'- uCCGGgGUUGgCGUGcCGgCGGUACU- -5' |
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18754 | 3' | -62.3 | NC_004683.1 | + | 39513 | 0.66 | 0.374757 |
Target: 5'- gAGGUCCUGGCCGCGagggcgaauguaagUGGUgGCgGUGGc -3' miRNA: 3'- -UCCGGGGUUGGCGU--------------GCCGgCGgUACU- -5' |
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18754 | 3' | -62.3 | NC_004683.1 | + | 7019 | 0.66 | 0.368896 |
Target: 5'- -cGCCC--GCCGCcaguCGGCCGCCucggucucaGUGAa -3' miRNA: 3'- ucCGGGguUGGCGu---GCCGGCGG---------UACU- -5' |
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18754 | 3' | -62.3 | NC_004683.1 | + | 18015 | 0.67 | 0.321277 |
Target: 5'- cGGGUCCC-ACUGCAUGG-UGCCGUc- -3' miRNA: 3'- -UCCGGGGuUGGCGUGCCgGCGGUAcu -5' |
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18754 | 3' | -62.3 | NC_004683.1 | + | 8538 | 0.67 | 0.292171 |
Target: 5'- aGGGCggCC-ACCGCAcCGGCCugaucGCCGUGGc -3' miRNA: 3'- -UCCGg-GGuUGGCGU-GCCGG-----CGGUACU- -5' |
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18754 | 3' | -62.3 | NC_004683.1 | + | 11073 | 0.67 | 0.313062 |
Target: 5'- uGGCCCCAcccauuggcguaaGCCuGUcCGGCCGCguUGc -3' miRNA: 3'- uCCGGGGU-------------UGG-CGuGCCGGCGguACu -5' |
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18754 | 3' | -62.3 | NC_004683.1 | + | 48933 | 0.67 | 0.328885 |
Target: 5'- uGGUCCCA--UGUGCGGCCGUCGa-- -3' miRNA: 3'- uCCGGGGUugGCGUGCCGGCGGUacu -5' |
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18754 | 3' | -62.3 | NC_004683.1 | + | 51642 | 0.67 | 0.309381 |
Target: 5'- gAGGCCCUcguucugcgugcgcuGGCgGCGCGcCUGCCGUGc -3' miRNA: 3'- -UCCGGGG---------------UUGgCGUGCcGGCGGUACu -5' |
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18754 | 3' | -62.3 | NC_004683.1 | + | 20673 | 0.67 | 0.313802 |
Target: 5'- uGGUgCCGauguugaucGCCGCACcGCCGCCAc-- -3' miRNA: 3'- uCCGgGGU---------UGGCGUGcCGGCGGUacu -5' |
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18754 | 3' | -62.3 | NC_004683.1 | + | 15867 | 0.67 | 0.328885 |
Target: 5'- cGGCCa-GGCCGCugaGGCCGCUGaGAa -3' miRNA: 3'- uCCGGggUUGGCGug-CCGGCGGUaCU- -5' |
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18754 | 3' | -62.3 | NC_004683.1 | + | 2198 | 0.67 | 0.328885 |
Target: 5'- uGGCCgCGACCGCcUGuGCCgcguGCCGUGu -3' miRNA: 3'- uCCGGgGUUGGCGuGC-CGG----CGGUACu -5' |
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18754 | 3' | -62.3 | NC_004683.1 | + | 25221 | 0.67 | 0.313062 |
Target: 5'- cAGGCCgCUAcCCGCaccggugACGGCgGCCAgGAc -3' miRNA: 3'- -UCCGG-GGUuGGCG-------UGCCGgCGGUaCU- -5' |
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18754 | 3' | -62.3 | NC_004683.1 | + | 13018 | 0.67 | 0.30646 |
Target: 5'- cGGCCaCCggUgGgGCGGCCGUCGa-- -3' miRNA: 3'- uCCGG-GGuuGgCgUGCCGGCGGUacu -5' |
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18754 | 3' | -62.3 | NC_004683.1 | + | 46446 | 0.67 | 0.292171 |
Target: 5'- cAGGUCUUggAGCCGCuguuccgucCGGCCGCCGaGAu -3' miRNA: 3'- -UCCGGGG--UUGGCGu--------GCCGGCGGUaCU- -5' |
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18754 | 3' | -62.3 | NC_004683.1 | + | 55009 | 0.67 | 0.292171 |
Target: 5'- cGGCCUCGAucCCGCAuuCGGCgGCUggGGa -3' miRNA: 3'- uCCGGGGUU--GGCGU--GCCGgCGGuaCU- -5' |
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18754 | 3' | -62.3 | NC_004683.1 | + | 24151 | 0.67 | 0.29925 |
Target: 5'- gAGGCgaucgCCGACCuGCACaaGGCCGCguCAUGAc -3' miRNA: 3'- -UCCGg----GGUUGG-CGUG--CCGGCG--GUACU- -5' |
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18754 | 3' | -62.3 | NC_004683.1 | + | 5155 | 0.67 | 0.30646 |
Target: 5'- aGGGCgCCAGCgacaacgugCGCGCcGCCGCCAc-- -3' miRNA: 3'- -UCCGgGGUUG---------GCGUGcCGGCGGUacu -5' |
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18754 | 3' | -62.3 | NC_004683.1 | + | 29996 | 0.67 | 0.30646 |
Target: 5'- cGGCUCCAacgcucACUGCGuCGGCUGCCc--- -3' miRNA: 3'- uCCGGGGU------UGGCGU-GCCGGCGGuacu -5' |
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18754 | 3' | -62.3 | NC_004683.1 | + | 53589 | 0.67 | 0.321277 |
Target: 5'- cGGCCgC-ACCGC-CGGCCGCg---- -3' miRNA: 3'- uCCGGgGuUGGCGuGCCGGCGguacu -5' |
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18754 | 3' | -62.3 | NC_004683.1 | + | 4741 | 0.67 | 0.328885 |
Target: 5'- cAGGCCCgCAACCGgGCcgacgaGGUccaCGCCcgGAu -3' miRNA: 3'- -UCCGGG-GUUGGCgUG------CCG---GCGGuaCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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