miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18756 3' -60.9 NC_004683.1 + 53 0.66 0.421193
Target:  5'- gUUCCGUgaCGCGCucauGUGUUGUCugCGg -3'
miRNA:   3'- aAGGGCA--GCGCGuu--CGCGACGGugGC- -5'
18756 3' -60.9 NC_004683.1 + 883 0.68 0.29774
Target:  5'- gUUCCGUgGCGCGGGCaCcgagGCCAUCGc -3'
miRNA:   3'- aAGGGCAgCGCGUUCGcGa---CGGUGGC- -5'
18756 3' -60.9 NC_004683.1 + 1458 0.67 0.335541
Target:  5'- -gCuuGUCGUGCcagccgAGGCGCUcGCgGCCGa -3'
miRNA:   3'- aaGggCAGCGCG------UUCGCGA-CGgUGGC- -5'
18756 3' -60.9 NC_004683.1 + 2277 0.66 0.412049
Target:  5'- cUCUCGaCGCG-AGGCGCUGCaCcCCGc -3'
miRNA:   3'- aAGGGCaGCGCgUUCGCGACG-GuGGC- -5'
18756 3' -60.9 NC_004683.1 + 2611 1.06 0.000403
Target:  5'- cUUCCCGUCGCGCAAGCGCUGCCACCGg -3'
miRNA:   3'- -AAGGGCAGCGCGUUCGCGACGGUGGC- -5'
18756 3' -60.9 NC_004683.1 + 5028 0.71 0.193914
Target:  5'- -cCUCGaCGCGCAuGCGCcgcugGCCGCCGc -3'
miRNA:   3'- aaGGGCaGCGCGUuCGCGa----CGGUGGC- -5'
18756 3' -60.9 NC_004683.1 + 5652 0.66 0.412049
Target:  5'- --aCCGUCGCGC---UGCUGuUCGCCGa -3'
miRNA:   3'- aagGGCAGCGCGuucGCGAC-GGUGGC- -5'
18756 3' -60.9 NC_004683.1 + 7501 0.69 0.250492
Target:  5'- -gCCCGUCGaUGUGgaauguggcAGCGCgcccgGCCGCCGa -3'
miRNA:   3'- aaGGGCAGC-GCGU---------UCGCGa----CGGUGGC- -5'
18756 3' -60.9 NC_004683.1 + 10305 0.72 0.1656
Target:  5'- aUUCCCGUUGaaccgacgcuCGaCGAGCGUucUGCCACCGc -3'
miRNA:   3'- -AAGGGCAGC----------GC-GUUCGCG--ACGGUGGC- -5'
18756 3' -60.9 NC_004683.1 + 12103 0.66 0.403028
Target:  5'- -gCCC--CGCGCGGGCGCgcugGCCcgcgucgauACCGg -3'
miRNA:   3'- aaGGGcaGCGCGUUCGCGa---CGG---------UGGC- -5'
18756 3' -60.9 NC_004683.1 + 13076 0.66 0.421193
Target:  5'- -gCCCGgcaggaagcCGCGCucGCGCaGCCACuCGu -3'
miRNA:   3'- aaGGGCa--------GCGCGuuCGCGaCGGUG-GC- -5'
18756 3' -60.9 NC_004683.1 + 13246 0.67 0.359852
Target:  5'- -aCCCGUCGacCGCAucGGCGUcGCCGUCGa -3'
miRNA:   3'- aaGGGCAGC--GCGU--UCGCGaCGGUGGC- -5'
18756 3' -60.9 NC_004683.1 + 13527 0.7 0.215071
Target:  5'- -cCCUG-CGCGgGGaacGCGCUGCCACCc -3'
miRNA:   3'- aaGGGCaGCGCgUU---CGCGACGGUGGc -5'
18756 3' -60.9 NC_004683.1 + 13721 0.68 0.28988
Target:  5'- uUUCgCCGgUGCGCGgccuGCGCUGCCaaacaccGCCGg -3'
miRNA:   3'- -AAG-GGCaGCGCGUu---CGCGACGG-------UGGC- -5'
18756 3' -60.9 NC_004683.1 + 18079 0.73 0.139919
Target:  5'- -aCCCGUCGCcgucggcguucaccGCAgggauGGCGcCUGCCACUGg -3'
miRNA:   3'- aaGGGCAGCG--------------CGU-----UCGC-GACGGUGGC- -5'
18756 3' -60.9 NC_004683.1 + 20407 0.74 0.119883
Target:  5'- gUgCUGuUCGCGCGGgacaugaacGCGCUGCCGCCGu -3'
miRNA:   3'- aAgGGC-AGCGCGUU---------CGCGACGGUGGC- -5'
18756 3' -60.9 NC_004683.1 + 22755 0.67 0.359852
Target:  5'- aUCCUGUUGC-CAAGCGCggUGaUCACCu -3'
miRNA:   3'- aAGGGCAGCGcGUUCGCG--AC-GGUGGc -5'
18756 3' -60.9 NC_004683.1 + 23195 0.66 0.412049
Target:  5'- cUUCUCGaugaGCGCca-CGCUGCCGCUGg -3'
miRNA:   3'- -AAGGGCag--CGCGuucGCGACGGUGGC- -5'
18756 3' -60.9 NC_004683.1 + 23902 0.69 0.276689
Target:  5'- gUUCCagCGcCGCGUAGGCGUgGCgGCCGa -3'
miRNA:   3'- -AAGG--GCaGCGCGUUCGCGaCGgUGGC- -5'
18756 3' -60.9 NC_004683.1 + 26030 0.68 0.305028
Target:  5'- -gCCCGUCGgacaGCccguAGCGCUGCCAg-- -3'
miRNA:   3'- aaGGGCAGCg---CGu---UCGCGACGGUggc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.