miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18756 3' -60.9 NC_004683.1 + 50952 0.85 0.018025
Target:  5'- cUUCCCGUCGCGCAcAGCGCUccggccgcacccGCCGCCa -3'
miRNA:   3'- -AAGGGCAGCGCGU-UCGCGA------------CGGUGGc -5'
18756 3' -60.9 NC_004683.1 + 13246 0.67 0.359852
Target:  5'- -aCCCGUCGacCGCAucGGCGUcGCCGUCGa -3'
miRNA:   3'- aaGGGCAGC--GCGU--UCGCGaCGGUGGC- -5'
18756 3' -60.9 NC_004683.1 + 26962 0.67 0.368225
Target:  5'- gUCCgcgCGUaCGCGUGAGCGCcgggcaggccgGCCACCu -3'
miRNA:   3'- aAGG---GCA-GCGCGUUCGCGa----------CGGUGGc -5'
18756 3' -60.9 NC_004683.1 + 32485 0.66 0.397676
Target:  5'- gUCCCGcacguaugccgggcaUCGUGCAgccggacguGGCGCagaccgGCCGCCu -3'
miRNA:   3'- aAGGGC---------------AGCGCGU---------UCGCGa-----CGGUGGc -5'
18756 3' -60.9 NC_004683.1 + 2277 0.66 0.412049
Target:  5'- cUCUCGaCGCG-AGGCGCUGCaCcCCGc -3'
miRNA:   3'- aAGGGCaGCGCgUUCGCGACG-GuGGC- -5'
18756 3' -60.9 NC_004683.1 + 5652 0.66 0.412049
Target:  5'- --aCCGUCGCGC---UGCUGuUCGCCGa -3'
miRNA:   3'- aagGGCAGCGCGuucGCGAC-GGUGGC- -5'
18756 3' -60.9 NC_004683.1 + 49324 0.66 0.412049
Target:  5'- -cCCCGacugCGCGCuguGCgGCUGCCcgcaccacgacgGCCGg -3'
miRNA:   3'- aaGGGCa---GCGCGuu-CG-CGACGG------------UGGC- -5'
18756 3' -60.9 NC_004683.1 + 53 0.66 0.421193
Target:  5'- gUUCCGUgaCGCGCucauGUGUUGUCugCGg -3'
miRNA:   3'- aAGGGCA--GCGCGuu--CGCGACGGugGC- -5'
18756 3' -60.9 NC_004683.1 + 31314 0.66 0.430459
Target:  5'- --gCCGUgGCGguGGCGgcgaUGUCGCCGu -3'
miRNA:   3'- aagGGCAgCGCguUCGCg---ACGGUGGC- -5'
18756 3' -60.9 NC_004683.1 + 26796 0.67 0.351614
Target:  5'- -cUuuGUCGCGCAGG-GCUauccgcuggcggGCCACCu -3'
miRNA:   3'- aaGggCAGCGCGUUCgCGA------------CGGUGGc -5'
18756 3' -60.9 NC_004683.1 + 41197 0.68 0.29774
Target:  5'- -aCCCGcCGaCGC-GGCGaagGCCGCCGa -3'
miRNA:   3'- aaGGGCaGC-GCGuUCGCga-CGGUGGC- -5'
18756 3' -60.9 NC_004683.1 + 883 0.68 0.29774
Target:  5'- gUUCCGUgGCGCGGGCaCcgagGCCAUCGc -3'
miRNA:   3'- aAGGGCAgCGCGUUCGcGa---CGGUGGC- -5'
18756 3' -60.9 NC_004683.1 + 44426 0.72 0.152881
Target:  5'- --gUCGUCGCGCGcacaacgcgcgcAGCGC-GCCACCGc -3'
miRNA:   3'- aagGGCAGCGCGU------------UCGCGaCGGUGGC- -5'
18756 3' -60.9 NC_004683.1 + 10305 0.72 0.1656
Target:  5'- aUUCCCGUUGaaccgacgcuCGaCGAGCGUucUGCCACCGc -3'
miRNA:   3'- -AAGGGCAGC----------GC-GUUCGCG--ACGGUGGC- -5'
18756 3' -60.9 NC_004683.1 + 56071 0.7 0.220661
Target:  5'- --aCCGcCGCGUcuGGCGCUGgCACCGc -3'
miRNA:   3'- aagGGCaGCGCGu-UCGCGACgGUGGC- -5'
18756 3' -60.9 NC_004683.1 + 44320 0.69 0.250492
Target:  5'- -aCCUGUCacaguCGCAGGCGCUcgcGCUGCCGu -3'
miRNA:   3'- aaGGGCAGc----GCGUUCGCGA---CGGUGGC- -5'
18756 3' -60.9 NC_004683.1 + 27209 0.69 0.256202
Target:  5'- --aCUGcCGCGCuGGCGCgucucgaUGCCGCCGa -3'
miRNA:   3'- aagGGCaGCGCGuUCGCG-------ACGGUGGC- -5'
18756 3' -60.9 NC_004683.1 + 40975 0.69 0.269941
Target:  5'- -aCCUGgccgCGCGCAucGcCGCUGCUACCc -3'
miRNA:   3'- aaGGGCa---GCGCGUu-C-GCGACGGUGGc -5'
18756 3' -60.9 NC_004683.1 + 23902 0.69 0.276689
Target:  5'- gUUCCagCGcCGCGUAGGCGUgGCgGCCGa -3'
miRNA:   3'- -AAGG--GCaGCGCGUUCGCGaCGgUGGC- -5'
18756 3' -60.9 NC_004683.1 + 13721 0.68 0.28988
Target:  5'- uUUCgCCGgUGCGCGgccuGCGCUGCCaaacaccGCCGg -3'
miRNA:   3'- -AAG-GGCaGCGCGUu---CGCGACGG-------UGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.