Results 21 - 40 of 44 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18756 | 3' | -60.9 | NC_004683.1 | + | 46780 | 0.68 | 0.312452 |
Target: 5'- -gCUCGUCGCGUcGGUGC-GCCACg- -3' miRNA: 3'- aaGGGCAGCGCGuUCGCGaCGGUGgc -5' |
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18756 | 3' | -60.9 | NC_004683.1 | + | 45550 | 0.68 | 0.320012 |
Target: 5'- -gCgCGUCGCGCGcgagaAGUGCUGCgGCgGu -3' miRNA: 3'- aaGgGCAGCGCGU-----UCGCGACGgUGgC- -5' |
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18756 | 3' | -60.9 | NC_004683.1 | + | 46120 | 0.67 | 0.327709 |
Target: 5'- gUCCCacaucGUgGCGCGGGacCGCUcgGCCGCCGc -3' miRNA: 3'- aAGGG-----CAgCGCGUUC--GCGA--CGGUGGC- -5' |
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18756 | 3' | -60.9 | NC_004683.1 | + | 1458 | 0.67 | 0.335541 |
Target: 5'- -gCuuGUCGUGCcagccgAGGCGCUcGCgGCCGa -3' miRNA: 3'- aaGggCAGCGCG------UUCGCGA-CGgUGGC- -5' |
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18756 | 3' | -60.9 | NC_004683.1 | + | 22755 | 0.67 | 0.359852 |
Target: 5'- aUCCUGUUGC-CAAGCGCggUGaUCACCu -3' miRNA: 3'- aAGGGCAGCGcGUUCGCG--AC-GGUGGc -5' |
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18756 | 3' | -60.9 | NC_004683.1 | + | 42707 | 0.67 | 0.368225 |
Target: 5'- aUCUCGUCGCG--GGCGUcgucgcgGUCGCCGa -3' miRNA: 3'- aAGGGCAGCGCguUCGCGa------CGGUGGC- -5' |
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18756 | 3' | -60.9 | NC_004683.1 | + | 27543 | 0.66 | 0.37673 |
Target: 5'- cUCCag-CGCGCucgcuGCgGCUGCCugCGg -3' miRNA: 3'- aAGGgcaGCGCGuu---CG-CGACGGugGC- -5' |
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18756 | 3' | -60.9 | NC_004683.1 | + | 12103 | 0.66 | 0.403028 |
Target: 5'- -gCCC--CGCGCGGGCGCgcugGCCcgcgucgauACCGg -3' miRNA: 3'- aaGGGcaGCGCGUUCGCGa---CGG---------UGGC- -5' |
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18756 | 3' | -60.9 | NC_004683.1 | + | 56682 | 0.66 | 0.412049 |
Target: 5'- -aCCCGcggccCGCGguGGUGCUGCCuuUGg -3' miRNA: 3'- aaGGGCa----GCGCguUCGCGACGGugGC- -5' |
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18756 | 3' | -60.9 | NC_004683.1 | + | 51965 | 0.68 | 0.309466 |
Target: 5'- gUUCCGgcgccacucacggaUCGCGCGguggugcagcucgAGCGCggucgGCCGCCGu -3' miRNA: 3'- aAGGGC--------------AGCGCGU-------------UCGCGa----CGGUGGC- -5' |
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18756 | 3' | -60.9 | NC_004683.1 | + | 26030 | 0.68 | 0.305028 |
Target: 5'- -gCCCGUCGgacaGCccguAGCGCUGCCAg-- -3' miRNA: 3'- aaGGGCAGCg---CGu---UCGCGACGGUggc -5' |
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18756 | 3' | -60.9 | NC_004683.1 | + | 45013 | 0.68 | 0.29774 |
Target: 5'- gUUUCGaCG-GCAGGCGCUGgCCACUGg -3' miRNA: 3'- aAGGGCaGCgCGUUCGCGAC-GGUGGC- -5' |
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18756 | 3' | -60.9 | NC_004683.1 | + | 20407 | 0.74 | 0.119883 |
Target: 5'- gUgCUGuUCGCGCGGgacaugaacGCGCUGCCGCCGu -3' miRNA: 3'- aAgGGC-AGCGCGUU---------CGCGACGGUGGC- -5' |
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18756 | 3' | -60.9 | NC_004683.1 | + | 44047 | 0.73 | 0.133642 |
Target: 5'- aUCCgGgaggCGCGCGGGUGCUGCCAg-- -3' miRNA: 3'- aAGGgCa---GCGCGUUCGCGACGGUggc -5' |
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18756 | 3' | -60.9 | NC_004683.1 | + | 53061 | 0.73 | 0.133642 |
Target: 5'- gUCuCCGUUGCGCcuGCGCUucuuucugGCCACCu -3' miRNA: 3'- aAG-GGCAGCGCGuuCGCGA--------CGGUGGc -5' |
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18756 | 3' | -60.9 | NC_004683.1 | + | 18079 | 0.73 | 0.139919 |
Target: 5'- -aCCCGUCGCcgucggcguucaccGCAgggauGGCGcCUGCCACUGg -3' miRNA: 3'- aaGGGCAGCG--------------CGU-----UCGC-GACGGUGGC- -5' |
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18756 | 3' | -60.9 | NC_004683.1 | + | 5028 | 0.71 | 0.193914 |
Target: 5'- -cCUCGaCGCGCAuGCGCcgcugGCCGCCGc -3' miRNA: 3'- aaGGGCaGCGCGUuCGCGa----CGGUGGC- -5' |
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18756 | 3' | -60.9 | NC_004683.1 | + | 40871 | 0.7 | 0.212869 |
Target: 5'- cUCgCCGUCG-GCGAGCGCgucggucgcggcgGUCACCGc -3' miRNA: 3'- aAG-GGCAGCgCGUUCGCGa------------CGGUGGC- -5' |
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18756 | 3' | -60.9 | NC_004683.1 | + | 13527 | 0.7 | 0.215071 |
Target: 5'- -cCCUG-CGCGgGGaacGCGCUGCCACCc -3' miRNA: 3'- aaGGGCaGCGCgUU---CGCGACGGUGGc -5' |
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18756 | 3' | -60.9 | NC_004683.1 | + | 7501 | 0.69 | 0.250492 |
Target: 5'- -gCCCGUCGaUGUGgaauguggcAGCGCgcccgGCCGCCGa -3' miRNA: 3'- aaGGGCAGC-GCGU---------UCGCGa----CGGUGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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