miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18756 3' -60.9 NC_004683.1 + 20407 0.74 0.119883
Target:  5'- gUgCUGuUCGCGCGGgacaugaacGCGCUGCCGCCGu -3'
miRNA:   3'- aAgGGC-AGCGCGUU---------CGCGACGGUGGC- -5'
18756 3' -60.9 NC_004683.1 + 42707 0.67 0.368225
Target:  5'- aUCUCGUCGCG--GGCGUcgucgcgGUCGCCGa -3'
miRNA:   3'- aAGGGCAGCGCguUCGCGa------CGGUGGC- -5'
18756 3' -60.9 NC_004683.1 + 12103 0.66 0.403028
Target:  5'- -gCCC--CGCGCGGGCGCgcugGCCcgcgucgauACCGg -3'
miRNA:   3'- aaGGGcaGCGCGUUCGCGa---CGG---------UGGC- -5'
18756 3' -60.9 NC_004683.1 + 13076 0.66 0.421193
Target:  5'- -gCCCGgcaggaagcCGCGCucGCGCaGCCACuCGu -3'
miRNA:   3'- aaGGGCa--------GCGCGuuCGCGaCGGUG-GC- -5'
18756 3' -60.9 NC_004683.1 + 5028 0.71 0.193914
Target:  5'- -cCUCGaCGCGCAuGCGCcgcugGCCGCCGc -3'
miRNA:   3'- aaGGGCaGCGCGUuCGCGa----CGGUGGC- -5'
18756 3' -60.9 NC_004683.1 + 40871 0.7 0.212869
Target:  5'- cUCgCCGUCG-GCGAGCGCgucggucgcggcgGUCACCGc -3'
miRNA:   3'- aAG-GGCAGCgCGUUCGCGa------------CGGUGGC- -5'
18756 3' -60.9 NC_004683.1 + 7501 0.69 0.250492
Target:  5'- -gCCCGUCGaUGUGgaauguggcAGCGCgcccgGCCGCCGa -3'
miRNA:   3'- aaGGGCAGC-GCGU---------UCGCGa----CGGUGGC- -5'
18756 3' -60.9 NC_004683.1 + 45013 0.68 0.29774
Target:  5'- gUUUCGaCG-GCAGGCGCUGgCCACUGg -3'
miRNA:   3'- aAGGGCaGCgCGUUCGCGAC-GGUGGC- -5'
18756 3' -60.9 NC_004683.1 + 46780 0.68 0.312452
Target:  5'- -gCUCGUCGCGUcGGUGC-GCCACg- -3'
miRNA:   3'- aaGGGCAGCGCGuUCGCGaCGGUGgc -5'
18756 3' -60.9 NC_004683.1 + 22755 0.67 0.359852
Target:  5'- aUCCUGUUGC-CAAGCGCggUGaUCACCu -3'
miRNA:   3'- aAGGGCAGCGcGUUCGCG--AC-GGUGGc -5'
18756 3' -60.9 NC_004683.1 + 45550 0.68 0.320012
Target:  5'- -gCgCGUCGCGCGcgagaAGUGCUGCgGCgGu -3'
miRNA:   3'- aaGgGCAGCGCGU-----UCGCGACGgUGgC- -5'
18756 3' -60.9 NC_004683.1 + 51965 0.68 0.309466
Target:  5'- gUUCCGgcgccacucacggaUCGCGCGguggugcagcucgAGCGCggucgGCCGCCGu -3'
miRNA:   3'- aAGGGC--------------AGCGCGU-------------UCGCGa----CGGUGGC- -5'
18756 3' -60.9 NC_004683.1 + 44047 0.73 0.133642
Target:  5'- aUCCgGgaggCGCGCGGGUGCUGCCAg-- -3'
miRNA:   3'- aAGGgCa---GCGCGUUCGCGACGGUggc -5'
18756 3' -60.9 NC_004683.1 + 46120 0.67 0.327709
Target:  5'- gUCCCacaucGUgGCGCGGGacCGCUcgGCCGCCGc -3'
miRNA:   3'- aAGGG-----CAgCGCGUUC--GCGA--CGGUGGC- -5'
18756 3' -60.9 NC_004683.1 + 53061 0.73 0.133642
Target:  5'- gUCuCCGUUGCGCcuGCGCUucuuucugGCCACCu -3'
miRNA:   3'- aAG-GGCAGCGCGuuCGCGA--------CGGUGGc -5'
18756 3' -60.9 NC_004683.1 + 26030 0.68 0.305028
Target:  5'- -gCCCGUCGgacaGCccguAGCGCUGCCAg-- -3'
miRNA:   3'- aaGGGCAGCg---CGu---UCGCGACGGUggc -5'
18756 3' -60.9 NC_004683.1 + 1458 0.67 0.335541
Target:  5'- -gCuuGUCGUGCcagccgAGGCGCUcGCgGCCGa -3'
miRNA:   3'- aaGggCAGCGCG------UUCGCGA-CGgUGGC- -5'
18756 3' -60.9 NC_004683.1 + 27543 0.66 0.37673
Target:  5'- cUCCag-CGCGCucgcuGCgGCUGCCugCGg -3'
miRNA:   3'- aAGGgcaGCGCGuu---CG-CGACGGugGC- -5'
18756 3' -60.9 NC_004683.1 + 18079 0.73 0.139919
Target:  5'- -aCCCGUCGCcgucggcguucaccGCAgggauGGCGcCUGCCACUGg -3'
miRNA:   3'- aaGGGCAGCG--------------CGU-----UCGC-GACGGUGGC- -5'
18756 3' -60.9 NC_004683.1 + 13527 0.7 0.215071
Target:  5'- -cCCUG-CGCGgGGaacGCGCUGCCACCc -3'
miRNA:   3'- aaGGGCaGCGCgUU---CGCGACGGUGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.