miRNA display CGI


Results 21 - 40 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18756 5' -54.3 NC_004683.1 + 46106 0.67 0.704802
Target:  5'- cGCGGGAcCGCuCGGCcGCCGCGUCGGg -3'
miRNA:   3'- cUGCUCUuGUG-GUUGaCGGCGUGGUC- -5'
18756 5' -54.3 NC_004683.1 + 21105 0.67 0.693876
Target:  5'- uGugGGGAaccACGCUGuucgguGCUGUCGCugCGGg -3'
miRNA:   3'- -CugCUCU---UGUGGU------UGACGGCGugGUC- -5'
18756 5' -54.3 NC_004683.1 + 7055 0.67 0.693876
Target:  5'- cGACGucuGGGCgcgccgGCCGACgaGCUGCACCAc -3'
miRNA:   3'- -CUGCu--CUUG------UGGUUGa-CGGCGUGGUc -5'
18756 5' -54.3 NC_004683.1 + 15247 0.67 0.693876
Target:  5'- cGACgGAGAugAUCGaguucgggccGCUGCUGCccaACCAGg -3'
miRNA:   3'- -CUG-CUCUugUGGU----------UGACGGCG---UGGUC- -5'
18756 5' -54.3 NC_004683.1 + 4159 0.67 0.682888
Target:  5'- cGugGGGGAUuCCcACUGCucgCGCACCAc -3'
miRNA:   3'- -CugCUCUUGuGGuUGACG---GCGUGGUc -5'
18756 5' -54.3 NC_004683.1 + 52521 0.67 0.681787
Target:  5'- cACGGGAGCACCGcgcgucucgcacaGgUGCCGgACCc- -3'
miRNA:   3'- cUGCUCUUGUGGU-------------UgACGGCgUGGuc -5'
18756 5' -54.3 NC_004683.1 + 17295 0.67 0.671852
Target:  5'- uACGGGGGCGCCGGg-GUCGgCACCAu -3'
miRNA:   3'- cUGCUCUUGUGGUUgaCGGC-GUGGUc -5'
18756 5' -54.3 NC_004683.1 + 51035 0.67 0.670746
Target:  5'- cGACGAGAcgaucgccgcgauGCGCCAGCaguucCCGCAUguGg -3'
miRNA:   3'- -CUGCUCU-------------UGUGGUUGac---GGCGUGguC- -5'
18756 5' -54.3 NC_004683.1 + 1219 0.68 0.660777
Target:  5'- uGCGAGGACGaCGAgUGuCCGCACUAu -3'
miRNA:   3'- cUGCUCUUGUgGUUgAC-GGCGUGGUc -5'
18756 5' -54.3 NC_004683.1 + 40043 0.68 0.660777
Target:  5'- cGACGcGAGuCACCAGCcgGCgaGCGCCAa -3'
miRNA:   3'- -CUGCuCUU-GUGGUUGa-CGg-CGUGGUc -5'
18756 5' -54.3 NC_004683.1 + 4115 0.68 0.64634
Target:  5'- cGCGAcGAGCAgCAGCUcauggaagagcugcGCCGCACguGg -3'
miRNA:   3'- cUGCU-CUUGUgGUUGA--------------CGGCGUGguC- -5'
18756 5' -54.3 NC_004683.1 + 31618 0.68 0.638556
Target:  5'- -cCGAGcuCGCCGGCgugGCCGaCGCCGa -3'
miRNA:   3'- cuGCUCuuGUGGUUGa--CGGC-GUGGUc -5'
18756 5' -54.3 NC_004683.1 + 37581 0.68 0.638556
Target:  5'- aGAUGAGAugACGCgGGCUGCgGC-CCGu -3'
miRNA:   3'- -CUGCUCU--UGUGgUUGACGgCGuGGUc -5'
18756 5' -54.3 NC_004683.1 + 15057 0.68 0.627432
Target:  5'- -cCGAGAACACCucGAC-GCCGUugCGc -3'
miRNA:   3'- cuGCUCUUGUGG--UUGaCGGCGugGUc -5'
18756 5' -54.3 NC_004683.1 + 41714 0.68 0.627432
Target:  5'- uGCGAGAGUGCCAugUucGCCGCGcgcCCGGa -3'
miRNA:   3'- cUGCUCUUGUGGUugA--CGGCGU---GGUC- -5'
18756 5' -54.3 NC_004683.1 + 46353 0.68 0.627432
Target:  5'- -uCG-GGACGCUggUUGCCccuGCGCCAGa -3'
miRNA:   3'- cuGCuCUUGUGGuuGACGG---CGUGGUC- -5'
18756 5' -54.3 NC_004683.1 + 5149 0.68 0.617423
Target:  5'- aGAUGcAGGGCGCCAGCgacaacgugcgcgccGCCGcCACCAa -3'
miRNA:   3'- -CUGC-UCUUGUGGUUGa--------------CGGC-GUGGUc -5'
18756 5' -54.3 NC_004683.1 + 15520 0.68 0.616311
Target:  5'- cACGAugccGAACACCGAuucgauCUGCUGCAgCAGc -3'
miRNA:   3'- cUGCU----CUUGUGGUU------GACGGCGUgGUC- -5'
18756 5' -54.3 NC_004683.1 + 1240 0.69 0.594123
Target:  5'- aGGCGcuuacGGGGCGCCAACUccucggaccgGCCGCGCUu- -3'
miRNA:   3'- -CUGC-----UCUUGUGGUUGA----------CGGCGUGGuc -5'
18756 5' -54.3 NC_004683.1 + 12781 0.69 0.594123
Target:  5'- -cCGAGGAUGCCGAggaUGCCGUGCCc- -3'
miRNA:   3'- cuGCUCUUGUGGUUg--ACGGCGUGGuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.