miRNA display CGI


Results 21 - 40 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18756 5' -54.3 NC_004683.1 + 17295 0.67 0.671852
Target:  5'- uACGGGGGCGCCGGg-GUCGgCACCAu -3'
miRNA:   3'- cUGCUCUUGUGGUUgaCGGC-GUGGUc -5'
18756 5' -54.3 NC_004683.1 + 18794 0.66 0.75811
Target:  5'- cGACGgcaAGGGCAUCGAuCUGCCGUucaucACCGc -3'
miRNA:   3'- -CUGC---UCUUGUGGUU-GACGGCG-----UGGUc -5'
18756 5' -54.3 NC_004683.1 + 19855 0.66 0.778595
Target:  5'- -cCGAGAGCGaCGACaG-CGCACCAGu -3'
miRNA:   3'- cuGCUCUUGUgGUUGaCgGCGUGGUC- -5'
18756 5' -54.3 NC_004683.1 + 20406 0.69 0.550207
Target:  5'- cGGCGcacccGGGGCgGCCAACgGCgGCACCGGc -3'
miRNA:   3'- -CUGC-----UCUUG-UGGUUGaCGgCGUGGUC- -5'
18756 5' -54.3 NC_004683.1 + 21105 0.67 0.693876
Target:  5'- uGugGGGAaccACGCUGuucgguGCUGUCGCugCGGg -3'
miRNA:   3'- -CugCUCU---UGUGGU------UGACGGCGugGUC- -5'
18756 5' -54.3 NC_004683.1 + 21416 0.72 0.426394
Target:  5'- cGAuCGGGAugguCACCGACaGCgGCGCCGGc -3'
miRNA:   3'- -CU-GCUCUu---GUGGUUGaCGgCGUGGUC- -5'
18756 5' -54.3 NC_004683.1 + 23158 0.67 0.715656
Target:  5'- cACGAGAgcGCGCCGG-UGa-GCACCAGg -3'
miRNA:   3'- cUGCUCU--UGUGGUUgACggCGUGGUC- -5'
18756 5' -54.3 NC_004683.1 + 23191 0.67 0.715656
Target:  5'- -uCGAuGAGCGCCAcGCUGCCGCuggcgaacGCCc- -3'
miRNA:   3'- cuGCU-CUUGUGGU-UGACGGCG--------UGGuc -5'
18756 5' -54.3 NC_004683.1 + 23717 0.71 0.445931
Target:  5'- cGCGGcGGCACCGGCgGCgGCACCAc -3'
miRNA:   3'- cUGCUcUUGUGGUUGaCGgCGUGGUc -5'
18756 5' -54.3 NC_004683.1 + 24339 0.72 0.388895
Target:  5'- cGCGAGAugcaACGCCGACUcgucGCCGCagGCCAc -3'
miRNA:   3'- cUGCUCU----UGUGGUUGA----CGGCG--UGGUc -5'
18756 5' -54.3 NC_004683.1 + 24655 0.66 0.778595
Target:  5'- -cCGAGuucgcGCGCCuGCUGC-GCACCAa -3'
miRNA:   3'- cuGCUCu----UGUGGuUGACGgCGUGGUc -5'
18756 5' -54.3 NC_004683.1 + 25955 0.67 0.715656
Target:  5'- cGGCGAacucGACGCCGA--GCCGCAgCCAGc -3'
miRNA:   3'- -CUGCUc---UUGUGGUUgaCGGCGU-GGUC- -5'
18756 5' -54.3 NC_004683.1 + 26234 0.71 0.455885
Target:  5'- cGCGAGGAUcaGCgaGACcGCCGCGCCGGc -3'
miRNA:   3'- cUGCUCUUG--UGg-UUGaCGGCGUGGUC- -5'
18756 5' -54.3 NC_004683.1 + 26430 0.66 0.768424
Target:  5'- cGCG-GAGgGCCAACgcgGCCucGCACCGc -3'
miRNA:   3'- cUGCuCUUgUGGUUGa--CGG--CGUGGUc -5'
18756 5' -54.3 NC_004683.1 + 26708 0.66 0.747665
Target:  5'- -uCGAGuGCGCCGGCgGCaucgCGCACCGa -3'
miRNA:   3'- cuGCUCuUGUGGUUGaCG----GCGUGGUc -5'
18756 5' -54.3 NC_004683.1 + 27190 0.67 0.715656
Target:  5'- cGACGGcGuAGCGgCGaugACUGCCGCGCUGGc -3'
miRNA:   3'- -CUGCU-C-UUGUgGU---UGACGGCGUGGUC- -5'
18756 5' -54.3 NC_004683.1 + 28040 0.66 0.747665
Target:  5'- gGGCGAG-ACAUUGGC-GCCGC-CCGGc -3'
miRNA:   3'- -CUGCUCuUGUGGUUGaCGGCGuGGUC- -5'
18756 5' -54.3 NC_004683.1 + 31618 0.68 0.638556
Target:  5'- -cCGAGcuCGCCGGCgugGCCGaCGCCGa -3'
miRNA:   3'- cuGCUCuuGUGGUUGa--CGGC-GUGGUc -5'
18756 5' -54.3 NC_004683.1 + 34182 0.66 0.737099
Target:  5'- cGACcAGcACGCCGACaucgauguguccUGCCGCuACCGGc -3'
miRNA:   3'- -CUGcUCuUGUGGUUG------------ACGGCG-UGGUC- -5'
18756 5' -54.3 NC_004683.1 + 37581 0.68 0.638556
Target:  5'- aGAUGAGAugACGCgGGCUGCgGC-CCGu -3'
miRNA:   3'- -CUGCUCU--UGUGgUUGACGgCGuGGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.