miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18756 5' -54.3 NC_004683.1 + 1219 0.68 0.660777
Target:  5'- uGCGAGGACGaCGAgUGuCCGCACUAu -3'
miRNA:   3'- cUGCUCUUGUgGUUgAC-GGCGUGGUc -5'
18756 5' -54.3 NC_004683.1 + 1240 0.69 0.594123
Target:  5'- aGGCGcuuacGGGGCGCCAACUccucggaccgGCCGCGCUu- -3'
miRNA:   3'- -CUGC-----UCUUGUGGUUGA----------CGGCGUGGuc -5'
18756 5' -54.3 NC_004683.1 + 1476 0.66 0.747665
Target:  5'- gGGCGuccucGAuCGCCGGCuUGUCGUGCCAGc -3'
miRNA:   3'- -CUGCu----CUuGUGGUUG-ACGGCGUGGUC- -5'
18756 5' -54.3 NC_004683.1 + 1976 0.7 0.507342
Target:  5'- uGACGcuGGccguGCACgcguggaGACUGCCGCACCGGc -3'
miRNA:   3'- -CUGC--UCu---UGUGg------UUGACGGCGUGGUC- -5'
18756 5' -54.3 NC_004683.1 + 2575 1.08 0.001394
Target:  5'- cGACGAGAACACCAACUGCCGCACCAGc -3'
miRNA:   3'- -CUGCUCUUGUGGUUGACGGCGUGGUC- -5'
18756 5' -54.3 NC_004683.1 + 3081 0.67 0.715656
Target:  5'- uGCuuGAugACCAgguucACUGUCGCACCGu -3'
miRNA:   3'- cUGcuCUugUGGU-----UGACGGCGUGGUc -5'
18756 5' -54.3 NC_004683.1 + 3291 0.79 0.152786
Target:  5'- cACGGGGgguACACCGGCUGCCGCGgCAa -3'
miRNA:   3'- cUGCUCU---UGUGGUUGACGGCGUgGUc -5'
18756 5' -54.3 NC_004683.1 + 4115 0.68 0.64634
Target:  5'- cGCGAcGAGCAgCAGCUcauggaagagcugcGCCGCACguGg -3'
miRNA:   3'- cUGCU-CUUGUgGUUGA--------------CGGCGUGguC- -5'
18756 5' -54.3 NC_004683.1 + 4159 0.67 0.682888
Target:  5'- cGugGGGGAUuCCcACUGCucgCGCACCAc -3'
miRNA:   3'- -CugCUCUUGuGGuUGACG---GCGUGGUc -5'
18756 5' -54.3 NC_004683.1 + 5149 0.68 0.617423
Target:  5'- aGAUGcAGGGCGCCAGCgacaacgugcgcgccGCCGcCACCAa -3'
miRNA:   3'- -CUGC-UCUUGUGGUUGa--------------CGGC-GUGGUc -5'
18756 5' -54.3 NC_004683.1 + 5948 0.72 0.436099
Target:  5'- cGGCGAGcccuC-CCAGCUGCUGgGCCGGc -3'
miRNA:   3'- -CUGCUCuu--GuGGUUGACGGCgUGGUC- -5'
18756 5' -54.3 NC_004683.1 + 6481 0.77 0.200964
Target:  5'- -uCGAGGACGCCAGC-GCCGaGCCGGg -3'
miRNA:   3'- cuGCUCUUGUGGUUGaCGGCgUGGUC- -5'
18756 5' -54.3 NC_004683.1 + 7055 0.67 0.693876
Target:  5'- cGACGucuGGGCgcgccgGCCGACgaGCUGCACCAc -3'
miRNA:   3'- -CUGCu--CUUG------UGGUUGa-CGGCGUGGUc -5'
18756 5' -54.3 NC_004683.1 + 12236 0.7 0.496842
Target:  5'- gGGCGGGAGCGcCCGGCgUGCCGaugcCCGGc -3'
miRNA:   3'- -CUGCUCUUGU-GGUUG-ACGGCgu--GGUC- -5'
18756 5' -54.3 NC_004683.1 + 12721 0.66 0.737099
Target:  5'- aGCGGGcccAGCAgCGGC-GCCGCgGCCAGg -3'
miRNA:   3'- cUGCUC---UUGUgGUUGaCGGCG-UGGUC- -5'
18756 5' -54.3 NC_004683.1 + 12781 0.69 0.594123
Target:  5'- -cCGAGGAUGCCGAggaUGCCGUGCCc- -3'
miRNA:   3'- cuGCUCUUGUGGUUg--ACGGCGUGGuc -5'
18756 5' -54.3 NC_004683.1 + 13649 0.66 0.778595
Target:  5'- uGGCGAGcuuGAUGCCGAuCUGUgcggccugagaUGCACCGGg -3'
miRNA:   3'- -CUGCUC---UUGUGGUU-GACG-----------GCGUGGUC- -5'
18756 5' -54.3 NC_004683.1 + 15057 0.68 0.627432
Target:  5'- -cCGAGAACACCucGAC-GCCGUugCGc -3'
miRNA:   3'- cuGCUCUUGUGG--UUGaCGGCGugGUc -5'
18756 5' -54.3 NC_004683.1 + 15247 0.67 0.693876
Target:  5'- cGACgGAGAugAUCGaguucgggccGCUGCUGCccaACCAGg -3'
miRNA:   3'- -CUG-CUCUugUGGU----------UGACGGCG---UGGUC- -5'
18756 5' -54.3 NC_004683.1 + 15520 0.68 0.616311
Target:  5'- cACGAugccGAACACCGAuucgauCUGCUGCAgCAGc -3'
miRNA:   3'- cUGCU----CUUGUGGUU------GACGGCGUgGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.