Results 1 - 20 of 59 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18756 | 5' | -54.3 | NC_004683.1 | + | 2575 | 1.08 | 0.001394 |
Target: 5'- cGACGAGAACACCAACUGCCGCACCAGc -3' miRNA: 3'- -CUGCUCUUGUGGUUGACGGCGUGGUC- -5' |
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18756 | 5' | -54.3 | NC_004683.1 | + | 3291 | 0.79 | 0.152786 |
Target: 5'- cACGGGGgguACACCGGCUGCCGCGgCAa -3' miRNA: 3'- cUGCUCU---UGUGGUUGACGGCGUgGUc -5' |
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18756 | 5' | -54.3 | NC_004683.1 | + | 6481 | 0.77 | 0.200964 |
Target: 5'- -uCGAGGACGCCAGC-GCCGaGCCGGg -3' miRNA: 3'- cuGCUCUUGUGGUUGaCGGCgUGGUC- -5' |
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18756 | 5' | -54.3 | NC_004683.1 | + | 47029 | 0.76 | 0.229696 |
Target: 5'- cACGAuGAugGCCAACggGCCGaCACCAGc -3' miRNA: 3'- cUGCU-CUugUGGUUGa-CGGC-GUGGUC- -5' |
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18756 | 5' | -54.3 | NC_004683.1 | + | 44384 | 0.75 | 0.290081 |
Target: 5'- cGGCGAGAuCGCCGA--GCCGCACgAGg -3' miRNA: 3'- -CUGCUCUuGUGGUUgaCGGCGUGgUC- -5' |
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18756 | 5' | -54.3 | NC_004683.1 | + | 24339 | 0.72 | 0.388895 |
Target: 5'- cGCGAGAugcaACGCCGACUcgucGCCGCagGCCAc -3' miRNA: 3'- cUGCUCU----UGUGGUUGA----CGGCG--UGGUc -5' |
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18756 | 5' | -54.3 | NC_004683.1 | + | 48599 | 0.72 | 0.388895 |
Target: 5'- cGGCGAGGACACUGGCgcgGCauugauCGCACCGc -3' miRNA: 3'- -CUGCUCUUGUGGUUGa--CG------GCGUGGUc -5' |
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18756 | 5' | -54.3 | NC_004683.1 | + | 21416 | 0.72 | 0.426394 |
Target: 5'- cGAuCGGGAugguCACCGACaGCgGCGCCGGc -3' miRNA: 3'- -CU-GCUCUu---GUGGUUGaCGgCGUGGUC- -5' |
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18756 | 5' | -54.3 | NC_004683.1 | + | 5948 | 0.72 | 0.436099 |
Target: 5'- cGGCGAGcccuC-CCAGCUGCUGgGCCGGc -3' miRNA: 3'- -CUGCUCuu--GuGGUUGACGGCgUGGUC- -5' |
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18756 | 5' | -54.3 | NC_004683.1 | + | 23717 | 0.71 | 0.445931 |
Target: 5'- cGCGGcGGCACCGGCgGCgGCACCAc -3' miRNA: 3'- cUGCUcUUGUGGUUGaCGgCGUGGUc -5' |
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18756 | 5' | -54.3 | NC_004683.1 | + | 40925 | 0.71 | 0.455885 |
Target: 5'- cGACccGGGCGCCgAGCUGaCCGCGCCGc -3' miRNA: 3'- -CUGcuCUUGUGG-UUGAC-GGCGUGGUc -5' |
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18756 | 5' | -54.3 | NC_004683.1 | + | 26234 | 0.71 | 0.455885 |
Target: 5'- cGCGAGGAUcaGCgaGACcGCCGCGCCGGc -3' miRNA: 3'- cUGCUCUUG--UGg-UUGaCGGCGUGGUC- -5' |
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18756 | 5' | -54.3 | NC_004683.1 | + | 12236 | 0.7 | 0.496842 |
Target: 5'- gGGCGGGAGCGcCCGGCgUGCCGaugcCCGGc -3' miRNA: 3'- -CUGCUCUUGU-GGUUG-ACGGCgu--GGUC- -5' |
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18756 | 5' | -54.3 | NC_004683.1 | + | 1976 | 0.7 | 0.507342 |
Target: 5'- uGACGcuGGccguGCACgcguggaGACUGCCGCACCGGc -3' miRNA: 3'- -CUGC--UCu---UGUGg------UUGACGGCGUGGUC- -5' |
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18756 | 5' | -54.3 | NC_004683.1 | + | 44013 | 0.7 | 0.526471 |
Target: 5'- uGACGAugcccugguagccGAugAUCAGCUggcacucgaccacGCCGCGCCGGg -3' miRNA: 3'- -CUGCU-------------CUugUGGUUGA-------------CGGCGUGGUC- -5' |
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18756 | 5' | -54.3 | NC_004683.1 | + | 52337 | 0.7 | 0.528614 |
Target: 5'- -uCGAGcucguGCGCCuuGgUGCCGCGCCGGc -3' miRNA: 3'- cuGCUCu----UGUGGu-UgACGGCGUGGUC- -5' |
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18756 | 5' | -54.3 | NC_004683.1 | + | 45097 | 0.7 | 0.538295 |
Target: 5'- cGACGAGGACACCGAa-GCCGagaucgaUugCGGg -3' miRNA: 3'- -CUGCUCUUGUGGUUgaCGGC-------GugGUC- -5' |
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18756 | 5' | -54.3 | NC_004683.1 | + | 44110 | 0.7 | 0.539374 |
Target: 5'- -uCGAGGugACCGGCgcugaGCCGCugUGGg -3' miRNA: 3'- cuGCUCUugUGGUUGa----CGGCGugGUC- -5' |
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18756 | 5' | -54.3 | NC_004683.1 | + | 20406 | 0.69 | 0.550207 |
Target: 5'- cGGCGcacccGGGGCgGCCAACgGCgGCACCGGc -3' miRNA: 3'- -CUGC-----UCUUG-UGGUUGaCGgCGUGGUC- -5' |
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18756 | 5' | -54.3 | NC_004683.1 | + | 1240 | 0.69 | 0.594123 |
Target: 5'- aGGCGcuuacGGGGCGCCAACUccucggaccgGCCGCGCUu- -3' miRNA: 3'- -CUGC-----UCUUGUGGUUGA----------CGGCGUGGuc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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