miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18756 5' -54.3 NC_004683.1 + 42046 0.66 0.747665
Target:  5'- cGGCGAGGGCaacaucggcgaACCGguggucacACUGCCGCcCuCAGa -3'
miRNA:   3'- -CUGCUCUUG-----------UGGU--------UGACGGCGuG-GUC- -5'
18756 5' -54.3 NC_004683.1 + 20406 0.69 0.550207
Target:  5'- cGGCGcacccGGGGCgGCCAACgGCgGCACCGGc -3'
miRNA:   3'- -CUGC-----UCUUG-UGGUUGaCGgCGUGGUC- -5'
18756 5' -54.3 NC_004683.1 + 5149 0.68 0.617423
Target:  5'- aGAUGcAGGGCGCCAGCgacaacgugcgcgccGCCGcCACCAa -3'
miRNA:   3'- -CUGC-UCUUGUGGUUGa--------------CGGC-GUGGUc -5'
18756 5' -54.3 NC_004683.1 + 4115 0.68 0.64634
Target:  5'- cGCGAcGAGCAgCAGCUcauggaagagcugcGCCGCACguGg -3'
miRNA:   3'- cUGCU-CUUGUgGUUGA--------------CGGCGUGguC- -5'
18756 5' -54.3 NC_004683.1 + 1219 0.68 0.660777
Target:  5'- uGCGAGGACGaCGAgUGuCCGCACUAu -3'
miRNA:   3'- cUGCUCUUGUgGUUgAC-GGCGUGGUc -5'
18756 5' -54.3 NC_004683.1 + 51035 0.67 0.670746
Target:  5'- cGACGAGAcgaucgccgcgauGCGCCAGCaguucCCGCAUguGg -3'
miRNA:   3'- -CUGCUCU-------------UGUGGUUGac---GGCGUGguC- -5'
18756 5' -54.3 NC_004683.1 + 15247 0.67 0.693876
Target:  5'- cGACgGAGAugAUCGaguucgggccGCUGCUGCccaACCAGg -3'
miRNA:   3'- -CUG-CUCUugUGGU----------UGACGGCG---UGGUC- -5'
18756 5' -54.3 NC_004683.1 + 27190 0.67 0.715656
Target:  5'- cGACGGcGuAGCGgCGaugACUGCCGCGCUGGc -3'
miRNA:   3'- -CUGCU-C-UUGUgGU---UGACGGCGUGGUC- -5'
18756 5' -54.3 NC_004683.1 + 26708 0.66 0.747665
Target:  5'- -uCGAGuGCGCCGGCgGCaucgCGCACCGa -3'
miRNA:   3'- cuGCUCuUGUGGUUGaCG----GCGUGGUc -5'
18756 5' -54.3 NC_004683.1 + 44110 0.7 0.539374
Target:  5'- -uCGAGGugACCGGCgcugaGCCGCugUGGg -3'
miRNA:   3'- cuGCUCUugUGGUUGa----CGGCGugGUC- -5'
18756 5' -54.3 NC_004683.1 + 45097 0.7 0.538295
Target:  5'- cGACGAGGACACCGAa-GCCGagaucgaUugCGGg -3'
miRNA:   3'- -CUGCUCUUGUGGUUgaCGGC-------GugGUC- -5'
18756 5' -54.3 NC_004683.1 + 1976 0.7 0.507342
Target:  5'- uGACGcuGGccguGCACgcguggaGACUGCCGCACCGGc -3'
miRNA:   3'- -CUGC--UCu---UGUGg------UUGACGGCGUGGUC- -5'
18756 5' -54.3 NC_004683.1 + 47029 0.76 0.229696
Target:  5'- cACGAuGAugGCCAACggGCCGaCACCAGc -3'
miRNA:   3'- cUGCU-CUugUGGUUGa-CGGC-GUGGUC- -5'
18756 5' -54.3 NC_004683.1 + 44384 0.75 0.290081
Target:  5'- cGGCGAGAuCGCCGA--GCCGCACgAGg -3'
miRNA:   3'- -CUGCUCUuGUGGUUgaCGGCGUGgUC- -5'
18756 5' -54.3 NC_004683.1 + 24339 0.72 0.388895
Target:  5'- cGCGAGAugcaACGCCGACUcgucGCCGCagGCCAc -3'
miRNA:   3'- cUGCUCU----UGUGGUUGA----CGGCG--UGGUc -5'
18756 5' -54.3 NC_004683.1 + 21416 0.72 0.426394
Target:  5'- cGAuCGGGAugguCACCGACaGCgGCGCCGGc -3'
miRNA:   3'- -CU-GCUCUu---GUGGUUGaCGgCGUGGUC- -5'
18756 5' -54.3 NC_004683.1 + 5948 0.72 0.436099
Target:  5'- cGGCGAGcccuC-CCAGCUGCUGgGCCGGc -3'
miRNA:   3'- -CUGCUCuu--GuGGUUGACGGCgUGGUC- -5'
18756 5' -54.3 NC_004683.1 + 23717 0.71 0.445931
Target:  5'- cGCGGcGGCACCGGCgGCgGCACCAc -3'
miRNA:   3'- cUGCUcUUGUGGUUGaCGgCGUGGUc -5'
18756 5' -54.3 NC_004683.1 + 40925 0.71 0.455885
Target:  5'- cGACccGGGCGCCgAGCUGaCCGCGCCGc -3'
miRNA:   3'- -CUGcuCUUGUGG-UUGAC-GGCGUGGUc -5'
18756 5' -54.3 NC_004683.1 + 12236 0.7 0.496842
Target:  5'- gGGCGGGAGCGcCCGGCgUGCCGaugcCCGGc -3'
miRNA:   3'- -CUGCUCUUGU-GGUUG-ACGGCgu--GGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.