miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18756 5' -54.3 NC_004683.1 + 53835 0.66 0.747665
Target:  5'- uGGCGAGccguGCAguCCAGCUGaUCGgGCCGGu -3'
miRNA:   3'- -CUGCUCu---UGU--GGUUGAC-GGCgUGGUC- -5'
18756 5' -54.3 NC_004683.1 + 52521 0.67 0.681787
Target:  5'- cACGGGAGCACCGcgcgucucgcacaGgUGCCGgACCc- -3'
miRNA:   3'- cUGCUCUUGUGGU-------------UgACGGCgUGGuc -5'
18756 5' -54.3 NC_004683.1 + 52337 0.7 0.528614
Target:  5'- -uCGAGcucguGCGCCuuGgUGCCGCGCCGGc -3'
miRNA:   3'- cuGCUCu----UGUGGu-UgACGGCGUGGUC- -5'
18756 5' -54.3 NC_004683.1 + 51035 0.67 0.670746
Target:  5'- cGACGAGAcgaucgccgcgauGCGCCAGCaguucCCGCAUguGg -3'
miRNA:   3'- -CUGCUCU-------------UGUGGUUGac---GGCGUGguC- -5'
18756 5' -54.3 NC_004683.1 + 48599 0.72 0.388895
Target:  5'- cGGCGAGGACACUGGCgcgGCauugauCGCACCGc -3'
miRNA:   3'- -CUGCUCUUGUGGUUGa--CG------GCGUGGUc -5'
18756 5' -54.3 NC_004683.1 + 47029 0.76 0.229696
Target:  5'- cACGAuGAugGCCAACggGCCGaCACCAGc -3'
miRNA:   3'- cUGCU-CUugUGGUUGa-CGGC-GUGGUC- -5'
18756 5' -54.3 NC_004683.1 + 46353 0.68 0.627432
Target:  5'- -uCG-GGACGCUggUUGCCccuGCGCCAGa -3'
miRNA:   3'- cuGCuCUUGUGGuuGACGG---CGUGGUC- -5'
18756 5' -54.3 NC_004683.1 + 46106 0.67 0.704802
Target:  5'- cGCGGGAcCGCuCGGCcGCCGCGUCGGg -3'
miRNA:   3'- cUGCUCUuGUG-GUUGaCGGCGUGGUC- -5'
18756 5' -54.3 NC_004683.1 + 45097 0.7 0.538295
Target:  5'- cGACGAGGACACCGAa-GCCGagaucgaUugCGGg -3'
miRNA:   3'- -CUGCUCUUGUGGUUgaCGGC-------GugGUC- -5'
18756 5' -54.3 NC_004683.1 + 44384 0.75 0.290081
Target:  5'- cGGCGAGAuCGCCGA--GCCGCACgAGg -3'
miRNA:   3'- -CUGCUCUuGUGGUUgaCGGCGUGgUC- -5'
18756 5' -54.3 NC_004683.1 + 44110 0.7 0.539374
Target:  5'- -uCGAGGugACCGGCgcugaGCCGCugUGGg -3'
miRNA:   3'- cuGCUCUugUGGUUGa----CGGCGugGUC- -5'
18756 5' -54.3 NC_004683.1 + 44013 0.7 0.526471
Target:  5'- uGACGAugcccugguagccGAugAUCAGCUggcacucgaccacGCCGCGCCGGg -3'
miRNA:   3'- -CUGCU-------------CUugUGGUUGA-------------CGGCGUGGUC- -5'
18756 5' -54.3 NC_004683.1 + 43759 0.66 0.768424
Target:  5'- -uUGGGcacugcacGCGCCAGCUGCgGCACgAGc -3'
miRNA:   3'- cuGCUCu-------UGUGGUUGACGgCGUGgUC- -5'
18756 5' -54.3 NC_004683.1 + 42827 0.67 0.704802
Target:  5'- cGGCGGcAACAgCAGCU-UCGCGCCGGa -3'
miRNA:   3'- -CUGCUcUUGUgGUUGAcGGCGUGGUC- -5'
18756 5' -54.3 NC_004683.1 + 42046 0.66 0.747665
Target:  5'- cGGCGAGGGCaacaucggcgaACCGguggucacACUGCCGCcCuCAGa -3'
miRNA:   3'- -CUGCUCUUG-----------UGGU--------UGACGGCGuG-GUC- -5'
18756 5' -54.3 NC_004683.1 + 41714 0.68 0.627432
Target:  5'- uGCGAGAGUGCCAugUucGCCGCGcgcCCGGa -3'
miRNA:   3'- cUGCUCUUGUGGUugA--CGGCGU---GGUC- -5'
18756 5' -54.3 NC_004683.1 + 41111 0.66 0.747665
Target:  5'- cGGCGAGGuagGCGCCGaggucACUGCCcugggguccGCAguCCAGa -3'
miRNA:   3'- -CUGCUCU---UGUGGU-----UGACGG---------CGU--GGUC- -5'
18756 5' -54.3 NC_004683.1 + 40925 0.71 0.455885
Target:  5'- cGACccGGGCGCCgAGCUGaCCGCGCCGc -3'
miRNA:   3'- -CUGcuCUUGUGG-UUGAC-GGCGUGGUc -5'
18756 5' -54.3 NC_004683.1 + 40043 0.68 0.660777
Target:  5'- cGACGcGAGuCACCAGCcgGCgaGCGCCAa -3'
miRNA:   3'- -CUGCuCUU-GUGGUUGa-CGg-CGUGGUc -5'
18756 5' -54.3 NC_004683.1 + 37581 0.68 0.638556
Target:  5'- aGAUGAGAugACGCgGGCUGCgGC-CCGu -3'
miRNA:   3'- -CUGCUCU--UGUGgUUGACGgCGuGGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.