miRNA display CGI


Results 41 - 60 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18757 3' -56.5 NC_004683.1 + 15604 0.67 0.591675
Target:  5'- aCUCGAagaUCGuGGCCGCGggcacgCCGCuGCGGAg -3'
miRNA:   3'- -GGGUU---AGC-CCGGCGUa-----GGCG-UGCUUg -5'
18757 3' -56.5 NC_004683.1 + 30747 0.67 0.602455
Target:  5'- gCCC-AUCGacGGCCGCugucgaCCGCACcGGCg -3'
miRNA:   3'- -GGGuUAGC--CCGGCGua----GGCGUGcUUG- -5'
18757 3' -56.5 NC_004683.1 + 52223 0.67 0.602455
Target:  5'- gUCGGUCGGGuCCGCcUCgGCGaccCGGGCc -3'
miRNA:   3'- gGGUUAGCCC-GGCGuAGgCGU---GCUUG- -5'
18757 3' -56.5 NC_004683.1 + 53695 0.67 0.602455
Target:  5'- gCCUGAUCGcGCCGCAgcUCgGCgGCGAAg -3'
miRNA:   3'- -GGGUUAGCcCGGCGU--AGgCG-UGCUUg -5'
18757 3' -56.5 NC_004683.1 + 37265 0.67 0.612179
Target:  5'- gCCAgugaGUCGucacaacGGCCGCuAUCUaGCGCGGGCg -3'
miRNA:   3'- gGGU----UAGC-------CCGGCG-UAGG-CGUGCUUG- -5'
18757 3' -56.5 NC_004683.1 + 56493 0.67 0.612179
Target:  5'- uCCCGA-CGcaugcccGGCCGCA-CCGCAUGGc- -3'
miRNA:   3'- -GGGUUaGC-------CCGGCGUaGGCGUGCUug -5'
18757 3' -56.5 NC_004683.1 + 51930 0.67 0.61326
Target:  5'- gCUCGAgCGcGGUCgGCcgCCGUGCGAACa -3'
miRNA:   3'- -GGGUUaGC-CCGG-CGuaGGCGUGCUUG- -5'
18757 3' -56.5 NC_004683.1 + 3586 0.67 0.61326
Target:  5'- gCCCGG-CGuGuCCGCGUCgGCGuCGAGCg -3'
miRNA:   3'- -GGGUUaGCcC-GGCGUAGgCGU-GCUUG- -5'
18757 3' -56.5 NC_004683.1 + 18300 0.67 0.624081
Target:  5'- -gCAGUCGGGCCcggagacgggcGCAUCgGCAacCGAugACa -3'
miRNA:   3'- ggGUUAGCCCGG-----------CGUAGgCGU--GCU--UG- -5'
18757 3' -56.5 NC_004683.1 + 43220 0.67 0.624081
Target:  5'- gCCAGUCGauccGGCCacGCAgCCGCACGc-- -3'
miRNA:   3'- gGGUUAGC----CCGG--CGUaGGCGUGCuug -5'
18757 3' -56.5 NC_004683.1 + 15345 0.67 0.624081
Target:  5'- aCCUggUUGGGCaGCAgCgGCcCGAACu -3'
miRNA:   3'- -GGGuuAGCCCGgCGUaGgCGuGCUUG- -5'
18757 3' -56.5 NC_004683.1 + 14781 0.67 0.624081
Target:  5'- cCCCGAUgGcuccugggauGGCaacgGCAUCCGCAUGcGCa -3'
miRNA:   3'- -GGGUUAgC----------CCGg---CGUAGGCGUGCuUG- -5'
18757 3' -56.5 NC_004683.1 + 44933 0.67 0.634909
Target:  5'- cUCCAGgcCGGGCCaccacgGCGaUUGCGCGAGCu -3'
miRNA:   3'- -GGGUUa-GCCCGG------CGUaGGCGUGCUUG- -5'
18757 3' -56.5 NC_004683.1 + 10876 0.67 0.634909
Target:  5'- uCCCGcugAUCcGaGCCGCAgaaGCGCGGACg -3'
miRNA:   3'- -GGGU---UAGcC-CGGCGUaggCGUGCUUG- -5'
18757 3' -56.5 NC_004683.1 + 24417 0.67 0.634909
Target:  5'- aCgAGUCGGcGuuGCAUCuCGCGggUGAACu -3'
miRNA:   3'- gGgUUAGCC-CggCGUAG-GCGU--GCUUG- -5'
18757 3' -56.5 NC_004683.1 + 20298 0.66 0.641405
Target:  5'- aCCCGGcCgGGGCggcgacggcggcagCGCGUucaugucCCGCGCGAACa -3'
miRNA:   3'- -GGGUUaG-CCCG--------------GCGUA-------GGCGUGCUUG- -5'
18757 3' -56.5 NC_004683.1 + 42590 0.66 0.645734
Target:  5'- -gCGGUCgGGGCCGguCGUCCGgCugGggUg -3'
miRNA:   3'- ggGUUAG-CCCGGC--GUAGGC-GugCuuG- -5'
18757 3' -56.5 NC_004683.1 + 17861 0.66 0.645734
Target:  5'- aCCCAAccgggCGGGCCGgGgacgCCGCA-GcGCg -3'
miRNA:   3'- -GGGUUa----GCCCGGCgUa---GGCGUgCuUG- -5'
18757 3' -56.5 NC_004683.1 + 35205 0.66 0.645734
Target:  5'- aUCCAAUCGGGacaagcaCGCAUCCauguCGGAa -3'
miRNA:   3'- -GGGUUAGCCCg------GCGUAGGcgu-GCUUg -5'
18757 3' -56.5 NC_004683.1 + 17323 0.66 0.645734
Target:  5'- cCCCGuaCGGcCCGUAUgCGUugGGGCg -3'
miRNA:   3'- -GGGUuaGCCcGGCGUAgGCGugCUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.