miRNA display CGI


Results 21 - 40 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18757 3' -56.5 NC_004683.1 + 25734 0.69 0.473896
Target:  5'- gCCGcgucgcagcuguucAUCGGGCCGCugCCGU-CGAGCa -3'
miRNA:   3'- gGGU--------------UAGCCCGGCGuaGGCGuGCUUG- -5'
18757 3' -56.5 NC_004683.1 + 46383 0.69 0.486912
Target:  5'- gCCCcGUgGGGCCGCuaCCGCGCc--- -3'
miRNA:   3'- -GGGuUAgCCCGGCGuaGGCGUGcuug -5'
18757 3' -56.5 NC_004683.1 + 52612 0.69 0.486912
Target:  5'- aCCCGAguacugCGGGCCGUG-CCaGCACGu-- -3'
miRNA:   3'- -GGGUUa-----GCCCGGCGUaGG-CGUGCuug -5'
18757 3' -56.5 NC_004683.1 + 33315 0.69 0.497039
Target:  5'- gCCGGgaaaCGGGCCGCcaaCCGCGCaGAGu -3'
miRNA:   3'- gGGUUa---GCCCGGCGua-GGCGUG-CUUg -5'
18757 3' -56.5 NC_004683.1 + 46383 0.69 0.507259
Target:  5'- aCCGccUCGGGCCGCGUCaGC-CGGu- -3'
miRNA:   3'- gGGUu-AGCCCGGCGUAGgCGuGCUug -5'
18757 3' -56.5 NC_004683.1 + 20233 0.69 0.517567
Target:  5'- gCgCAGUCGGuGCCggGUAUCgGCGCGAucaGCa -3'
miRNA:   3'- -GgGUUAGCC-CGG--CGUAGgCGUGCU---UG- -5'
18757 3' -56.5 NC_004683.1 + 46089 0.68 0.527958
Target:  5'- gCCGcGUCGGGCaGCAcUCGC-CGAACa -3'
miRNA:   3'- gGGU-UAGCCCGgCGUaGGCGuGCUUG- -5'
18757 3' -56.5 NC_004683.1 + 42296 0.68 0.527958
Target:  5'- aCCgGAUCcgGGGCagaUGUCCGCGCGGAUa -3'
miRNA:   3'- -GGgUUAG--CCCGgc-GUAGGCGUGCUUG- -5'
18757 3' -56.5 NC_004683.1 + 56608 0.68 0.535278
Target:  5'- aCCAccgCGGGCCGCGgguacgacUaccagcacaagaagCUGCGCGAACa -3'
miRNA:   3'- gGGUua-GCCCGGCGU--------A--------------GGCGUGCUUG- -5'
18757 3' -56.5 NC_004683.1 + 12562 0.68 0.542633
Target:  5'- uUCCAGgugcccugcugcgccUCGGacaGCCGCAUCUGCGCuGAGa -3'
miRNA:   3'- -GGGUU---------------AGCC---CGGCGUAGGCGUG-CUUg -5'
18757 3' -56.5 NC_004683.1 + 25977 0.68 0.548963
Target:  5'- aCCGAggcGGCCaGCGUCUGCccgGCGAACu -3'
miRNA:   3'- gGGUUagcCCGG-CGUAGGCG---UGCUUG- -5'
18757 3' -56.5 NC_004683.1 + 4891 0.68 0.558502
Target:  5'- gCCGAaCuGGcCCGCGUCCGaucgacuCACGAGCa -3'
miRNA:   3'- gGGUUaGcCC-GGCGUAGGC-------GUGCUUG- -5'
18757 3' -56.5 NC_004683.1 + 22184 0.68 0.559564
Target:  5'- aUCCAGUaCGGGuuGCG-CgGgGCGGGCg -3'
miRNA:   3'- -GGGUUA-GCCCggCGUaGgCgUGCUUG- -5'
18757 3' -56.5 NC_004683.1 + 49023 0.68 0.559564
Target:  5'- gCCCGAcCGGGaaGCGcUCGCACGGc- -3'
miRNA:   3'- -GGGUUaGCCCggCGUaGGCGUGCUug -5'
18757 3' -56.5 NC_004683.1 + 12016 0.68 0.570222
Target:  5'- aUCGAcgCGGGCCagcGCGcCCGCGCGGGg -3'
miRNA:   3'- gGGUUa-GCCCGG---CGUaGGCGUGCUUg -5'
18757 3' -56.5 NC_004683.1 + 21480 0.68 0.570222
Target:  5'- uCCCGAUCggaaucagcaGGGCCGCGacaucagcgCCGCAUGc-- -3'
miRNA:   3'- -GGGUUAG----------CCCGGCGUa--------GGCGUGCuug -5'
18757 3' -56.5 NC_004683.1 + 40193 0.68 0.570222
Target:  5'- --uGGUCGcGGCCGCGUCCgGCugGu-- -3'
miRNA:   3'- gggUUAGC-CCGGCGUAGG-CGugCuug -5'
18757 3' -56.5 NC_004683.1 + 49289 0.67 0.580928
Target:  5'- gCCGAUCGGGauagggCGCGgguuagCCaGCACGAGg -3'
miRNA:   3'- gGGUUAGCCCg-----GCGUa-----GG-CGUGCUUg -5'
18757 3' -56.5 NC_004683.1 + 9269 0.67 0.591675
Target:  5'- aCCCucgCGGGgCGCAUgcCCGgGCuGGACg -3'
miRNA:   3'- -GGGuuaGCCCgGCGUA--GGCgUG-CUUG- -5'
18757 3' -56.5 NC_004683.1 + 15604 0.67 0.591675
Target:  5'- aCUCGAagaUCGuGGCCGCGggcacgCCGCuGCGGAg -3'
miRNA:   3'- -GGGUU---AGC-CCGGCGUa-----GGCG-UGCUUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.