miRNA display CGI


Results 21 - 40 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18757 3' -56.5 NC_004683.1 + 15345 0.67 0.624081
Target:  5'- aCCUggUUGGGCaGCAgCgGCcCGAACu -3'
miRNA:   3'- -GGGuuAGCCCGgCGUaGgCGuGCUUG- -5'
18757 3' -56.5 NC_004683.1 + 18300 0.67 0.624081
Target:  5'- -gCAGUCGGGCCcggagacgggcGCAUCgGCAacCGAugACa -3'
miRNA:   3'- ggGUUAGCCCGG-----------CGUAGgCGU--GCU--UG- -5'
18757 3' -56.5 NC_004683.1 + 43220 0.67 0.624081
Target:  5'- gCCAGUCGauccGGCCacGCAgCCGCACGc-- -3'
miRNA:   3'- gGGUUAGC----CCGG--CGUaGGCGUGCuug -5'
18757 3' -56.5 NC_004683.1 + 14781 0.67 0.624081
Target:  5'- cCCCGAUgGcuccugggauGGCaacgGCAUCCGCAUGcGCa -3'
miRNA:   3'- -GGGUUAgC----------CCGg---CGUAGGCGUGCuUG- -5'
18757 3' -56.5 NC_004683.1 + 3586 0.67 0.61326
Target:  5'- gCCCGG-CGuGuCCGCGUCgGCGuCGAGCg -3'
miRNA:   3'- -GGGUUaGCcC-GGCGUAGgCGU-GCUUG- -5'
18757 3' -56.5 NC_004683.1 + 51930 0.67 0.61326
Target:  5'- gCUCGAgCGcGGUCgGCcgCCGUGCGAACa -3'
miRNA:   3'- -GGGUUaGC-CCGG-CGuaGGCGUGCUUG- -5'
18757 3' -56.5 NC_004683.1 + 37265 0.67 0.612179
Target:  5'- gCCAgugaGUCGucacaacGGCCGCuAUCUaGCGCGGGCg -3'
miRNA:   3'- gGGU----UAGC-------CCGGCG-UAGG-CGUGCUUG- -5'
18757 3' -56.5 NC_004683.1 + 56493 0.67 0.612179
Target:  5'- uCCCGA-CGcaugcccGGCCGCA-CCGCAUGGc- -3'
miRNA:   3'- -GGGUUaGC-------CCGGCGUaGGCGUGCUug -5'
18757 3' -56.5 NC_004683.1 + 30747 0.67 0.602455
Target:  5'- gCCC-AUCGacGGCCGCugucgaCCGCACcGGCg -3'
miRNA:   3'- -GGGuUAGC--CCGGCGua----GGCGUGcUUG- -5'
18757 3' -56.5 NC_004683.1 + 52223 0.67 0.602455
Target:  5'- gUCGGUCGGGuCCGCcUCgGCGaccCGGGCc -3'
miRNA:   3'- gGGUUAGCCC-GGCGuAGgCGU---GCUUG- -5'
18757 3' -56.5 NC_004683.1 + 53695 0.67 0.602455
Target:  5'- gCCUGAUCGcGCCGCAgcUCgGCgGCGAAg -3'
miRNA:   3'- -GGGUUAGCcCGGCGU--AGgCG-UGCUUg -5'
18757 3' -56.5 NC_004683.1 + 15604 0.67 0.591675
Target:  5'- aCUCGAagaUCGuGGCCGCGggcacgCCGCuGCGGAg -3'
miRNA:   3'- -GGGUU---AGC-CCGGCGUa-----GGCG-UGCUUg -5'
18757 3' -56.5 NC_004683.1 + 9269 0.67 0.591675
Target:  5'- aCCCucgCGGGgCGCAUgcCCGgGCuGGACg -3'
miRNA:   3'- -GGGuuaGCCCgGCGUA--GGCgUG-CUUG- -5'
18757 3' -56.5 NC_004683.1 + 20134 0.67 0.591675
Target:  5'- aCCUcGUCGGGCC-CAaCCGCGCc--- -3'
miRNA:   3'- -GGGuUAGCCCGGcGUaGGCGUGcuug -5'
18757 3' -56.5 NC_004683.1 + 49289 0.67 0.580928
Target:  5'- gCCGAUCGGGauagggCGCGgguuagCCaGCACGAGg -3'
miRNA:   3'- gGGUUAGCCCg-----GCGUa-----GG-CGUGCUUg -5'
18757 3' -56.5 NC_004683.1 + 40193 0.68 0.570222
Target:  5'- --uGGUCGcGGCCGCGUCCgGCugGu-- -3'
miRNA:   3'- gggUUAGC-CCGGCGUAGG-CGugCuug -5'
18757 3' -56.5 NC_004683.1 + 21480 0.68 0.570222
Target:  5'- uCCCGAUCggaaucagcaGGGCCGCGacaucagcgCCGCAUGc-- -3'
miRNA:   3'- -GGGUUAG----------CCCGGCGUa--------GGCGUGCuug -5'
18757 3' -56.5 NC_004683.1 + 12016 0.68 0.570222
Target:  5'- aUCGAcgCGGGCCagcGCGcCCGCGCGGGg -3'
miRNA:   3'- gGGUUa-GCCCGG---CGUaGGCGUGCUUg -5'
18757 3' -56.5 NC_004683.1 + 49023 0.68 0.559564
Target:  5'- gCCCGAcCGGGaaGCGcUCGCACGGc- -3'
miRNA:   3'- -GGGUUaGCCCggCGUaGGCGUGCUug -5'
18757 3' -56.5 NC_004683.1 + 22184 0.68 0.559564
Target:  5'- aUCCAGUaCGGGuuGCG-CgGgGCGGGCg -3'
miRNA:   3'- -GGGUUA-GCCCggCGUaGgCgUGCUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.