Results 21 - 40 of 72 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18757 | 3' | -56.5 | NC_004683.1 | + | 14781 | 0.67 | 0.624081 |
Target: 5'- cCCCGAUgGcuccugggauGGCaacgGCAUCCGCAUGcGCa -3' miRNA: 3'- -GGGUUAgC----------CCGg---CGUAGGCGUGCuUG- -5' |
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18757 | 3' | -56.5 | NC_004683.1 | + | 18300 | 0.67 | 0.624081 |
Target: 5'- -gCAGUCGGGCCcggagacgggcGCAUCgGCAacCGAugACa -3' miRNA: 3'- ggGUUAGCCCGG-----------CGUAGgCGU--GCU--UG- -5' |
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18757 | 3' | -56.5 | NC_004683.1 | + | 3586 | 0.67 | 0.61326 |
Target: 5'- gCCCGG-CGuGuCCGCGUCgGCGuCGAGCg -3' miRNA: 3'- -GGGUUaGCcC-GGCGUAGgCGU-GCUUG- -5' |
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18757 | 3' | -56.5 | NC_004683.1 | + | 56493 | 0.67 | 0.612179 |
Target: 5'- uCCCGA-CGcaugcccGGCCGCA-CCGCAUGGc- -3' miRNA: 3'- -GGGUUaGC-------CCGGCGUaGGCGUGCUug -5' |
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18757 | 3' | -56.5 | NC_004683.1 | + | 49289 | 0.67 | 0.580928 |
Target: 5'- gCCGAUCGGGauagggCGCGgguuagCCaGCACGAGg -3' miRNA: 3'- gGGUUAGCCCg-----GCGUa-----GG-CGUGCUUg -5' |
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18757 | 3' | -56.5 | NC_004683.1 | + | 37265 | 0.67 | 0.612179 |
Target: 5'- gCCAgugaGUCGucacaacGGCCGCuAUCUaGCGCGGGCg -3' miRNA: 3'- gGGU----UAGC-------CCGGCG-UAGG-CGUGCUUG- -5' |
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18757 | 3' | -56.5 | NC_004683.1 | + | 10876 | 0.67 | 0.634909 |
Target: 5'- uCCCGcugAUCcGaGCCGCAgaaGCGCGGACg -3' miRNA: 3'- -GGGU---UAGcC-CGGCGUaggCGUGCUUG- -5' |
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18757 | 3' | -56.5 | NC_004683.1 | + | 44933 | 0.67 | 0.634909 |
Target: 5'- cUCCAGgcCGGGCCaccacgGCGaUUGCGCGAGCu -3' miRNA: 3'- -GGGUUa-GCCCGG------CGUaGGCGUGCUUG- -5' |
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18757 | 3' | -56.5 | NC_004683.1 | + | 24417 | 0.67 | 0.634909 |
Target: 5'- aCgAGUCGGcGuuGCAUCuCGCGggUGAACu -3' miRNA: 3'- gGgUUAGCC-CggCGUAG-GCGU--GCUUG- -5' |
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18757 | 3' | -56.5 | NC_004683.1 | + | 51930 | 0.67 | 0.61326 |
Target: 5'- gCUCGAgCGcGGUCgGCcgCCGUGCGAACa -3' miRNA: 3'- -GGGUUaGC-CCGG-CGuaGGCGUGCUUG- -5' |
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18757 | 3' | -56.5 | NC_004683.1 | + | 20134 | 0.67 | 0.591675 |
Target: 5'- aCCUcGUCGGGCC-CAaCCGCGCc--- -3' miRNA: 3'- -GGGuUAGCCCGGcGUaGGCGUGcuug -5' |
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18757 | 3' | -56.5 | NC_004683.1 | + | 15604 | 0.67 | 0.591675 |
Target: 5'- aCUCGAagaUCGuGGCCGCGggcacgCCGCuGCGGAg -3' miRNA: 3'- -GGGUU---AGC-CCGGCGUa-----GGCG-UGCUUg -5' |
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18757 | 3' | -56.5 | NC_004683.1 | + | 9269 | 0.67 | 0.591675 |
Target: 5'- aCCCucgCGGGgCGCAUgcCCGgGCuGGACg -3' miRNA: 3'- -GGGuuaGCCCgGCGUA--GGCgUG-CUUG- -5' |
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18757 | 3' | -56.5 | NC_004683.1 | + | 30747 | 0.67 | 0.602455 |
Target: 5'- gCCC-AUCGacGGCCGCugucgaCCGCACcGGCg -3' miRNA: 3'- -GGGuUAGC--CCGGCGua----GGCGUGcUUG- -5' |
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18757 | 3' | -56.5 | NC_004683.1 | + | 52223 | 0.67 | 0.602455 |
Target: 5'- gUCGGUCGGGuCCGCcUCgGCGaccCGGGCc -3' miRNA: 3'- gGGUUAGCCC-GGCGuAGgCGU---GCUUG- -5' |
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18757 | 3' | -56.5 | NC_004683.1 | + | 42296 | 0.68 | 0.527958 |
Target: 5'- aCCgGAUCcgGGGCagaUGUCCGCGCGGAUa -3' miRNA: 3'- -GGgUUAG--CCCGgc-GUAGGCGUGCUUG- -5' |
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18757 | 3' | -56.5 | NC_004683.1 | + | 40193 | 0.68 | 0.570222 |
Target: 5'- --uGGUCGcGGCCGCGUCCgGCugGu-- -3' miRNA: 3'- gggUUAGC-CCGGCGUAGG-CGugCuug -5' |
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18757 | 3' | -56.5 | NC_004683.1 | + | 46089 | 0.68 | 0.527958 |
Target: 5'- gCCGcGUCGGGCaGCAcUCGC-CGAACa -3' miRNA: 3'- gGGU-UAGCCCGgCGUaGGCGuGCUUG- -5' |
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18757 | 3' | -56.5 | NC_004683.1 | + | 56608 | 0.68 | 0.535278 |
Target: 5'- aCCAccgCGGGCCGCGgguacgacUaccagcacaagaagCUGCGCGAACa -3' miRNA: 3'- gGGUua-GCCCGGCGU--------A--------------GGCGUGCUUG- -5' |
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18757 | 3' | -56.5 | NC_004683.1 | + | 4891 | 0.68 | 0.558502 |
Target: 5'- gCCGAaCuGGcCCGCGUCCGaucgacuCACGAGCa -3' miRNA: 3'- gGGUUaGcCC-GGCGUAGGC-------GUGCUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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